Gene detail

Detailed information of ENSSYXP00000019680.1 in Micromussa lordhowensis

Genomic Location: not available for this species
NR annotation: XP_020609602.1, LOW QUALITY PROTEIN: rhophilin-2-like [Orbicella faveolata]
Species abbreviation MLORD · all data for this species · gene families

Sequence

CDS

ENSSYXT00000020747

ATGTTCCCTATGGCGAACGGACTTCAAATGTCAGAGAACGGTGAGGCGAAAAATGATCTGCTCATCGACCGTGGGAGCTCGCTTGAAGTGGATGACAGTGAACTCGGCTCTCGCAAGACATCTGCCAGATGGAAGTTACAACATAAAAGACAAGTTTTAAATCAGAAAATATTCAAGCAGACGAAGTTGCGAGACGGAGCAGAGAATTTGATGAAAGCTCTCAGGATAACAAATGACCGGAAAACAAAGCTCGCTGCTAAGACAGAGTTGAGCTTTGCCAACTCCCAACTGGACATGCTGAAGGAGGAGCTAGAAGGAATTAACAGCACCTTGGATATTTATCAGTTTGACAGAAATGTTGAGCATCAGATTCCTTTGATTGCTGTGGGTCTCAGAGAAACAAAAGAGCTTGTTTTCAAGCCTCAGTTTAAGgaCTTTATTTTAGAACATTACAGTGAAACTCCAGAAAATTACGACAAAGAACTGGAGCTATTTGAAAATCTCAGAAAGGATGCGGTGTGTAAGGCCAGCAGAGATGAAGCAGGCATTCATGCTTTGTACATGTACTACAATCAACTGTACTTTGTGGAGAGGAAATTCTTTCCCAAGGGAAAGGGATACGTCATGCCAGTTTACTTCCATTGGTTTGATACCACGACTGGATTGCTAAAAATACAGAGATCTGTTGCATTTGAAAAGGCTAGCATTCTCTTCAACATTGGTTCTATCTGGAGTCAAATTGGTGCAAAACAAGACAGAAGAACACAGTCTGGGCTAACTTTAGCCATTGATGCTTTTAATAAAGCCGCAGGTGTATTCAAGTTTATAAAAGACAATTTTGTCAACTCTCCCAGTGCAGACTTAACACCAGAGGTAATGGACATGCTGATGGCCGTCATGCTGGCCCAGGCACAGTTGTGTATGTGGGAAGAACATAGCCTTGAAGGAATTCAAGATACGTTGTCACACAAGATAAGTGCAGCTCAGGAGTGTGCTGAGGTTAGTCAGAGGTACAAAAAGGCACAGATGACGATGAATGCTGGAATCTGCTTGAGTTGTGTTCCATTGTCTTGGAAGAACATGATGTCTATTATGAGTCTTCATTACTATGCCTTGTCACATTACTTTGTTGCTGAAGGGCTTCTTAAAAGTGTTGAGAGTTCCAGCTttgataaagaagaagaagcagtGATCTCTTCATTACACTTGTCTCAACCGGACGATAAATCATTTAGAAAAAAGCAAGCCAAAGCACACCTCCATTCTGCGCTTAAATCACACGAAGAAGCCATGAAAGCAAGGCAAATCTGTCGGCACTGTAGGAAAATAATAGGGTTACAAAAGGCCCTTCAAGAAGCTCGTGTACAAACCATAGACACATTAGTTGCCATGGAAGAGGAAGATGACTTTGAAGATCCTTTGACACCATCCCCTATCAAAGCTTTACCTAGACTAATTGCAGATTGTGTTCCACCTAATTTTAGTCAAGCTTCAGTGGAAGATTTGTTTCATAGACTGGGTCCTGTACATGTGTTCAATGCAAATTTAGAATGGAGTGTACCAAGGGGTATCACGTTAAAGAAAAGTAGCAGAGGCTATGGCTTCAGTGTTATTGGCTCTGCTCCTGTAATTATACAGAGTGTGGAAGAACAAGGACCTGCTAAgGATGCTGGAATTCATGTAGGAGACATAATCACTTCTGTGGATGAGATAGACTGCAAATGGGGTGATCATCCTTTTGTTGTGTCATTAATTCGTAATACTGACACTTCTGTGACTCTTGATATTGTAACGCCATGCTCTCTCAAAGACATTACTGAGTTATACAATGTTAAACTGGCTAGGGAAGATCAGGTTGTAACCAGTGACTACAGTGACTCTAATGGAAGTCAGAGCTCAGGCTCATCTAGAAACAGTACTCTTAATGGAGTATACTCCCAAACAAGCAGCAGCTCATCTGGTTCAACACGATCTGGGACTGCCGTTCGACACAGTTCTGTGCTGGAAATGGGTAATGAGTCGATTCTGTGGTAG

Transcript

ENSSYXT00000020747

GCGATTGATACTTGAAAGTGATTCTATAATGTTGGTATTTGAACGGAAATATAAACATGCAGTGGAACAAAAACTCCCACAAACAATGACGTTAAGTGATTCACCGATATAGTTGTCGTACTTGCTTTAGAAATCTTATTCTGTTAGTTTTTTTAACTACAAACTCTAGTTGCACGAGAGATAACCGCCATGTTCCCTATGGCGAACGGACTTCAAATGTCAGAGAACGGTGAGGCGAAAAATGATCTGCTCATCGACCGTGGGAGCTCGCTTGAAGTGGATGACAGTGAACTCGGCTCTCGCAAGACATCTGCCAGATGGAAGTTACAACATAAAAGACAAGTTTTAAATCAGAAAATATTCAAGCAGACGAAGTTGCGAGACGGAGCAGAGAATTTGATGAAAGCTCTCAGGATAACAAATGACCGGAAAACAAAGCTCGCTGCTAAGACAGAGTTGAGCTTTGCCAACTCCCAACTGGACATGCTGAAGGAGGAGCTAGAAGGAATTAACAGCACCTTGGATATTTATCAGTTTGACAGAAATGTTGAGCATCAGATTCCTTTGATTGCTGTGGGTCTCAGAGAAACAAAAGAGCTTGTTTTCAAGCCTCAGTTTAAGgaCTTTATTTTAGAACATTACAGTGAAACTCCAGAAAATTACGACAAAGAACTGGAGCTATTTGAAAATCTCAGAAAGGATGCGGTGTGTAAGGCCAGCAGAGATGAAGCAGGCATTCATGCTTTGTACATGTACTACAATCAACTGTACTTTGTGGAGAGGAAATTCTTTCCCAAGGGAAAGGGATACGTCATGCCAGTTTACTTCCATTGGTTTGATACCACGACTGGATTGCTAAAAATACAGAGATCTGTTGCATTTGAAAAGGCTAGCATTCTCTTCAACATTGGTTCTATCTGGAGTCAAATTGGTGCAAAACAAGACAGAAGAACACAGTCTGGGCTAACTTTAGCCATTGATGCTTTTAATAAAGCCGCAGGTGTATTCAAGTTTATAAAAGACAATTTTGTCAACTCTCCCAGTGCAGACTTAACACCAGAGGTAATGGACATGCTGATGGCCGTCATGCTGGCCCAGGCACAGTTGTGTATGTGGGAAGAACATAGCCTTGAAGGAATTCAAGATACGTTGTCACACAAGATAAGTGCAGCTCAGGAGTGTGCTGAGGTTAGTCAGAGGTACAAAAAGGCACAGATGACGATGAATGCTGGAATCTGCTTGAGTTGTGTTCCATTGTCTTGGAAGAACATGATGTCTATTATGAGTCTTCATTACTATGCCTTGTCACATTACTTTGTTGCTGAAGGGCTTCTTAAAAGTGTTGAGAGTTCCAGCTttgataaagaagaagaagcagtGATCTCTTCATTACACTTGTCTCAACCGGACGATAAATCATTTAGAAAAAAGCAAGCCAAAGCACACCTCCATTCTGCGCTTAAATCACACGAAGAAGCCATGAAAGCAAGGCAAATCTGTCGGCACTGTAGGAAAATAATAGGGTTACAAAAGGCCCTTCAAGAAGCTCGTGTACAAACCATAGACACATTAGTTGCCATGGAAGAGGAAGATGACTTTGAAGATCCTTTGACACCATCCCCTATCAAAGCTTTACCTAGACTAATTGCAGATTGTGTTCCACCTAATTTTAGTCAAGCTTCAGTGGAAGATTTGTTTCATAGACTGGGTCCTGTACATGTGTTCAATGCAAATTTAGAATGGAGTGTACCAAGGGGTATCACGTTAAAGAAAAGTAGCAGAGGCTATGGCTTCAGTGTTATTGGCTCTGCTCCTGTAATTATACAGAGTGTGGAAGAACAAGGACCTGCTAAgGATGCTGGAATTCATGTAGGAGACATAATCACTTCTGTGGATGAGATAGACTGCAAATGGGGTGATCATCCTTTTGTTGTGTCATTAATTCGTAATACTGACACTTCTGTGACTCTTGATATTGTAACGCCATGCTCTCTCAAAGACATTACTGAGTTATACAATGTTAAACTGGCTAGGGAAGATCAGGTTGTAACCAGTGACTACAGTGACTCTAATGGAAGTCAGAGCTCAGGCTCATCTAGAAACAGTACTCTTAATGGAGTATACTCCCAAACAAGCAGCAGCTCATCTGGTTCAACACGATCTGGGACTGCCGTTCGACACAGTTCTGTGCTGGAAATGGGTAATGAGTCGATTCTGTGGTAGTGTCAACTGAAGTCATTACCTACCAAAGTCCTGTTTGTCATAGTTGAGGAGATAATTGCTCGCCTGAGCTAATGACCTTTCATCCCACATTACAGTGAAAACTATTCATCCATTCTTGCAAGAACGTAGAAACAGATTCATTAAAGGACCCCTGATTTCATTGCTCAGTATTCCATTATTGAAATGGatagttcaatattcaaattgtaatttGATTCAAAAGTTTTGATATGTAGAGTAGACTAATGTTTGGCTTTGCACAAGCATGTCAATATTCACCCCAAATCAAATTTAAATATGAATTGCCAAATGTCCCATGCAGTGTTGTTACactgtataaataaataactctCACATTATAGAGACAGCTTACACAATCTTAAGTACCTGTAATGCCATTTATGCATCCATATACAATGCCATCAAATCACTTAGTCATGGCCACATTTTCAGCGCTGAGAACTTAAATGGACCTAATGTATTGGTCTCTGCACAGTAATGAATTGCAAAAGAATTATATTCACAATAACCAAATATGGAAGAATTCTTGGGTCTTACCATAACCCATTTATACAGTAAGGTAATTTATAGATTAAAAGTAAAAAGTTAAGCTGTTTAAGGTATTGCACGCCATAATTGTGTACTTTTAATAAGAAGGTATCATCTGATACTAGCTTCATAACCAAATTTGTTTGAATTGCAGCATTAAAAATAGACATATTTTCTGAATGTATAAAaagtatttttgtaaaaattgtttaaatataatatatagtttattttgtttactttaaTATGCAATGAATTGCAAAGAGTGTATTAAATACCAGCCGAGTCAAGTCTGTTGGGAGTCAACTTTGCTTGTCTGATATTAGCATGTTTCAGGCTGATGTCAAGTGCTTTTGGGAGCTGATATCTGTCTGATTCTTGCTGATGTTTAGCCTGTTTCAAGCTCTCAAGTCAGGTGTTTTCTCTACTCTTCTTTATTCCTGCTATAAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q63ZR5	Rhophilin-2-B OS=Xenopus laevis OX=8355 GN=rhpn2-b PE=2 SV=1
Q6TNR1	Rhophilin-2 OS=Danio rerio OX=7955 GN=rhpn2 PE=2 SV=1
Q8IUC4	Rhophilin-2 OS=Homo sapiens OX=9606 GN=RHPN2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007500 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02185 all species →	HR1	Hr1 repeat	Family	Interproscan
PF03097 all species →	BRO1	BRO1-like domain	Repeat	Interproscan
PF00595 all species →	PDZ	PDZ domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036034 all species →	Homologous_superfamily	PDZ superfamily	Interproscan
IPR004328 all species →	Domain	BRO1 domain	Interproscan
IPR047138 all species →	Family	Rhophilin-1/2	Interproscan
IPR001478 all species →	Domain	PDZ domain	Interproscan
IPR038499 all species →	Homologous_superfamily	BRO1 domain superfamily	Interproscan
IPR011072 all species →	Domain	HR1 rho-binding domain	Interproscan
IPR036274 all species →	Homologous_superfamily	HR1 repeat superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23031 all species →	RHOPHILIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0051497 all species →	Biological Process	negative regulation of stress fiber assembly	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSSYXP00000019680.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.