Gene detail

Detailed information of ENSSYXP00000019959.1 in Micromussa lordhowensis

Genomic Location: not available for this species
NR annotation: PFX26017.1, Pre-mRNA-splicing factor cwc2 [Stylophora pistillata]
Species abbreviation MLORD · all data for this species · gene families

Sequence

CDS

ENSSYXT00000021043

atggcggttGCACTGTCGGTTGCACTGGAAGCATTGAAAGTTTGTGAATTTCTAGAAGGAATTTTAAAGGAAACGTTTGGACCGAATGGACTTGATGTCATGCTTAATTCATCTTCAGGAAATACACTCATAACCAACAATGGTGCAGTGATTTTGAAATCGCTGAATTTGGACAATCTTATTGGTCGAACCATCGTTGACAAAATTATTTCCTATTGTTGCATATCTGGAGATGGGGGAACCTCATTTCTTCTACTTTTAACGACAGTTTTAAGAGAGGTTGTTGTTCTTACTGGAATCAGAGCAAAAGGTAATGGAATGGAAATCCCCTCTCACCAAAGGCAGTCCATTGTTGCTTTGTCTCGAGCTTTTCACGAACTTGAATCTTCACTGGAAGTCCTTCTTGTCCCTGTTCTCGACAAAATCGCAGTGAAGACGGACCTTGAGCTCAAGTATTTCTCGTTAATAAAACAAAGAATCGTAAGACTTTTTGTCACAACATTAAATGGTAAATTTCCGATCAATGCGGTTTCTCATTTTGCTGAAGTTCTTTGTGAATTGGTGACAAAGACCTGGAATTCATCAGTGATGTCGCTGAAAGATTCACTGTTACATCTGATCGATGAATTTCCTCAGATCTGCATAGAGGTTCCCGGGTTGCCTGCCTTGTCATCTCAAGTCAAATCTGGAATATTAATTCCTCGTGGATTTGCTACAGAACAAGAAGGAGTACCAACAAACGTGCAGGACTTCATGTTTGTGGTCATGAACTGTAGTCTTGACACTTCAGAGCCTCAAATACCTTCATCAATTAGAATCAAAAGTAATGTTTCTTTTGATGCCAGCATCCAATGGAAAAGGAACCAAGTTCAAAAATTAATTGCCATGTTTAAAGATCAAAATGTTAGATTGATTCTGTCATCACAGAGTGTGTCTGATCTTGTCTTGCATTTCTGCAGACAACATGAGATAGCTGTTGTTAGCATGGTGCCTCAGGAATATGCAGACTACATCTGCAAGTGCGCAGGTGTGCTAGCCATTGACAGTTTTGATGGTAATAGTCTATCAGAACTGTTTTTGGTGAAAGGTATTTCTTGTGGTCTTCATACTGTAGGTCATCACAAGCTTGTCCACCTTCAGTTTGACTCGCTGAATTGCAAATTTCTTCCGCACAGCATACTGCTTTGCTCGCCAGCACAAGGACTGTGTAAACAGAGCAATCTTGCTCTTCATCATGCTTTGAAATGTTTGAAGATGTCCTTTAGTGAAGATGGAAAAAAGTTGCTTTTTCTACCTGGTGCTGGTGCCTGTGAACTGGCCATGAGCTTCAGTTTGAAGGCTTTTTCTAAAAGTGTAACGGATTCATATTTGTTGCTAGTTTTGGAAATTCTGAGTAAAGCCTTGCAAACTATTCCAAAAATACTCCATCAAAATTCATTTTCTCTGTCAAGCCAAAAGGACAATGTTATGTTCTGCATGAATGAGATTGAAAGATGTTGGAAGCAAGATGAAAAGTTGTTTGGGATAGATGCGAGGACTGGTAAACCAGTGGATCCTTTCAATGTTGAAATTTATGAGCCTCTTCAGGGGAAATTGTTGCTGCTACAGAGTTTACTGCAGTGCTCATCACAGTTGTTGAGGACGGAAAAATTCATTGGTAATTCGCAAGAgttgaaaggCCTCGGTACTGGAATCTGCGAGAATGCGACCAGCGGGTTttacctaaaaatcaaaatggccGCTAAACGAAAGGCTGAGGACACGGACGATAGCGACAGAAATTCGTCAAATATACAACACAAGAGACACGAAACTACAACTACACATGAAGTCACGACTAATTACAGCACACAGGCTGGCTGTGGCTCACAATGGTACGAGCAGCGTGGCCAGTGGATAGCTTTATATGACTGGAACAGCGGACTTTATTATTATCAAAATATCAGCAATTATCGAACACAGTGGGAAAAACCAGCCGAATGGGATTCCATTCATCCATTGTTCATCCCTGCGAACCATTTTTATCAAGGATTTTATAATGAAACAGTAAATACCAGCGACGTTAACCAGGAAGAGAACTTCAAACAATCCGGTGCTGATGTGGAAGCTAAGGTTGAAAGGCTCGTCACTCGACCAGCTCGCAGACAAATAGATCCcgaggaaaaagaaaagttgCACTGGATTCCTGAGGGGGCCACAGAGTACAACATATGGTATGATCGCTGGGTGGGAGAACACTGGTGGGAGAATAAAGACCACGGACCTTCAGAGACAAAGTGCTGTATTGAAACAGATGCTGGGTTTACAAAGGCTAACATTTATGATCCTGGTGGAAACAAACACTATTACTGCATCTACTTTGCCAGAGGCTGTTGCCATTTGGGGTCTGAATGtggatatttacatgtaataccGACTGATAAAGATGAAAAGAGAATTGGCCTTGCTCGTGATGTTTTTGGCCGAGAACGTCACCGTTTACACAAGGATGACATGGGAGGAATTGGAACTTTTGACAAAGAATGCAGAACTCTCTATGTTGGAGGCCTGGGTAATCGATCTACATTGGAAAAACTGCTGTGGATTGAATTTGGCGAGTGGGGTGAAATTGAGGACATAAGGATAATACCAAAACGCAACATAGCTTTTGTATGCTACAAGAACAGAGTGAATGCTGAATTTGCAAAGATTGCAATGTCAGACCAAAAGTTGGACAATAGAGAGTTGCTCAATGTCAGATGGGCTTTTGATGATCCTAATCCAAAATCAAGGAAAGAGGAGCTTTTAAGAGCTAAACAAAGAGTACTCGAGGCTGCATCAGAACGAGGATTACTTCAAGCGGCTCTTGCTCGCCCCACTTATCCAACTGGTGCGCAGGTAACAGGGCCTTATCCAAACACAGACAATCAGTACCCTGTGGAATGCGGCCCTTTGACCAAGGAGCAAATTGAGCAGGCGCAGGTTCTCCAGAATGTGTACACGGACTGCACAAGATTGGACGAGGCGCTCAAGAAAGGAGAGGCCATTCATGCTAAAGATACGGAAAGCAGTCTGAAGACAAACTCTGACCAAAAAACAGCTGAACACAGCAGTAATGAGAGTGCGGACACTTTGGGAACAAATTGGAGCAGTTGTGATGACTTCACAGGCTATAGTGGTTATGATTACGCGCAGGCATGGAACTCTTCACAACATTATCAAACTGAGGAATGTGGCTCAACAAAAGATCCTTACAGAGAGAATCTGGCGTCAAAAACCGAGACTCCTTCCGATTCCTCGTGGACTAACTACCGACAAAGTTACGAGCCACTACCATTTATCGACCGATCATCCTCGGAGTTTGTTCCCACTTCAAAAGGATGA

Transcript

ENSSYXT00000021043

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q54PH5	Pre-mRNA-splicing factor cwc2 OS=Dictyostelium discoideum OX=44689 GN=cwc2 PE=3 SV=1
P87126	Pre-mRNA-splicing factor cwf2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=cwf2 PE=1 SV=2
Q4WU07	Pre-mRNA-splicing factor cwc2 OS=Aspergillus fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC A1100 / Af293) OX=330879 GN=cwc2 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002319 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076 all species →	RRM_1	RNA recognition motif	Domain	Interproscan
PF00118 all species →	Cpn60_TCP1	TCP-1/cpn60 chaperonin family	Family	Interproscan
PF16131 all species →	Torus	Torus domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001202 all species →	Domain	WW domain	Interproscan
IPR027409 all species →	Homologous_superfamily	GroEL-like apical domain superfamily	Interproscan
IPR027410 all species →	Homologous_superfamily	TCP-1-like chaperonin intermediate domain superfamily	Interproscan
IPR027413 all species →	Homologous_superfamily	GroEL-like equatorial domain superfamily	Interproscan
IPR017998 all species →	Family	Chaperone tailless complex polypeptide 1 (TCP-1)	Interproscan
IPR034181 all species →	Domain	Pre-mRNA-splicing factor Cwc2, RNA recognition motif	Interproscan
IPR000504 all species →	Domain	RNA recognition motif domain	Interproscan
IPR002423 all species →	Family	Chaperonin Cpn60/GroEL/TCP-1 family	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR032297 all species →	Domain	Torus domain	Interproscan
IPR042619 all species →	Family	Bardet-Biedl syndrome 10 protein	Interproscan
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR000571 all species →	Domain	Zinc finger, CCCH-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14667 all species →	BARDET-BIEDL SYNDROME 10 PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0140662 all species →	Molecular Function	ATP-dependent protein folding chaperone	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0051131 all species →	Biological Process	chaperone-mediated protein complex assembly	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSSYXP00000019959.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.