Gene detail

Detailed information of ENSSYXP00000021180.1 in Micromussa lordhowensis

Genomic Location: :...
NR annotation: KAJ7355995.1, TNF receptor-associated factor 4 [Desmophyllum pertusum]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

ENSSYXT00000022359

cacgtcacgtgttccaaaacctggcggccatgtttactATAGTAACAAAATCGATAGTAACAGAAGCGCAGTCCACGTAAAGTAAAGTGTATAAGATGATgtgaatacctggcttcatcaaatgtacgaacagaatttaatgggcaagagagacaattattatgctgcaagttggttcgtccagtttacgaaattcaaacgtttgcagttggtcagtcgatttggtcgaatgtggaagtaaaatgcagataatgacttatgctggagaaagggccaactttcgtcactcttttacactggGTACTATTTTTTCCTGACATGGCCTGGGAGAGGGAGATACTTTCTCTTCGCGTCAAATGCAAGCAGAGTGGGACAGGATGTGACTGGACTGGACAACTACGTCATTATGAGGAACACTTTGTTATCTGCCAATATGAGGACGTAACTTGTGGTGACTGTAAAGAGGAGATGCAGAGAAGACTCCTGCACGAACACACCAGATCAGAATGTCCAAACAGGATCGTGCAATGTGAATACTGTGAAAAAGAGTTCGCATTTATCTTCACAAAGTTTCATGAAGATCACGAGTGTGCACGTTTTCCTCTGGAATGTACACAAGAATGTGGATTGCAGATTCCCCGTGAGGAGgtAGAGTCCCATTTGAGGGACGACTGTAAGATGACCATGGTGGTTTGCTCTTACCGGGAAGCTGGATGTACCTTTCATGACAAAAGGAGTAATTTAGAAAACCATCTTGAGATCGCGAGTAAGGAGCACCTGGCCAAGACGTGGTCAAGTTTTATCGAGTTGAAAAATGAGAATAAAGCCATTAGAAAATTACTGGACATGAAGAGCGGAGAAATGAACCAGCTGCAAAGACAGCTAGAAGAAGTCCAATTTACCGCTTCCAACGACCAAGTACAGATAGGCAAACTGAAACATCTTGTCTTTACCATGTATTTGAAATCCGAGGATATGGAGGGAGAGCTGCCGTATCCTaccagaaagtcaaaaggaattATGGGAAGGTTTAAAATCAGGAGGTCGAGTAGCCAGGACCAAAGCGGACAGAAAGAGAAACCTTTCAGAGAGAGACCAGGGTCAACCACGTGGTTTTAAAGTTACCCGTTTAGCGATCCATAAGTCAGAAGTAGTCAGACGAGGACCAGACATGATCGAGTTTCATAAACTAGTAGTCAAACAAAGTAGTCAAACTTGCTTTGACCACGCTCACGAGCAGTCAGTGCGCTGGTCATGATTTCTGTGAGAGGATATACGTCTCTTGCTGTTATATTCGTCTGAAAATTACAGGAAGTACGAGAGAAGTAGACGGTAGATGGCTTTTTGTAGAAATTTGGAAGTTTGATTTACCAATTGTTTTTACTGATTGCTGGGTTAACTTTTCCAAGCTCTATGCTTGAATGTCTTCCTTTATATAGTTCCAGAGTATTTCCTATAGCCTATAACAAAGATTTGTACTTACCTTGCTCAGGGAATAGTGTAGTCTTTTATAATCCTTGAAGCCGGAGCTCCTAATGTCTCATGAAGAGACTGAGTATAGTGCCACAGTTTCAGCATCGGTGCCATCTAGACTCCGGTAACAGGTGACCGTGCGGGACGTATTCTCCACGGGTAGACCATTCTAGCAACTCACTGACACACTTGTGGGACCAATATCATAAGCAATCCTAGAAATAGAATGTCAAGTCAGATAGCAAGTGTCAAGTCAGATAGTCAGTTAAGTCGCTTTGCGTTGTCATGCCCAGCAGACTTAATTGCTATACACATTCATTTTCACTATAGGTTATATAAGTTATGGAGCGATTTACTCGATGTTGAGCTCGATAGTAAAAAGTTGTAGTTGATTATCGAATCTAGTAAAACCGATAAATAAAGGGGCGGTGCATGGGTTGTTATAGGTGTTTCAGGGAAAGCTACCTGTCCTGTTAATGATGTTGAATCGCTATCTCGATGAGGCTCAGCTTAGTCACGACAGTCCTCTTTTTTGCCAGTTAACTAAGACTAAATATGGATATAAAGCTAGAGACAGAGGTCTTGGCTACACCAGGTTAAGA

Protein

Uniprot

Uniprot term	Description
Q54FD5	TNF receptor-associated factor family protein DDB_G0290931 OS=Dictyostelium discoideum OX=44689 GN=DDB_G0290931 PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02176	zf-TRAF	TRAF-type zinc finger	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR001293	Domain	Zinc finger, TRAF-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10131	TNF RECEPTOR ASSOCIATED FACTOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0033209	Biological Process	tumor necrosis factor-mediated signaling pathway	Interproscan
GO:0070534	Biological Process	protein K63-linked ubiquitination	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K09848	TRAF4; TNF receptor-associated factor 4	-	Small cell lung cancer	ko05222	deepkoala