Gene detail

Detailed information of ENSSYXP00000022710.1 in Micromussa lordhowensis

Genomic Location: :...
NR annotation: XP_020609508.1, RNA-binding protein 39-like isoform X1 [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

ENSSYXT00000023968

CCCCACTAACGCGCTTGTAACTCGTGTTTCGCCATCTTGGAACAAGAAAGGTGAATTTGGGAAACTGTGTGCTACATTTTTCGCCATTCAACGGGTAAATTTGAGGCACTAACCATGGCAGACGACTTTGATGTGGAGGCAATGCTTGAAGCTCCCTATAGAAAGGAGACTCCACCTGCCCAAGCAAATGGTAATAAGAGTGAATCGAAAAGGCAAAGCAGTGATGgggaagaaagaagaaaacgAAGTCAACGAAATCGCAGTCGTAGTAGAAGCCCAGACAGgagtcgTCGGCGTCGAAGTCGTAGCCGTAGCAATAGCCGTGAAAGAAATCGAAGACGACGGAGCCGTTCAGGGGGTCGTGACAGGAGGCGTAGAGGTCGTAGTGCCAGTGGCAGTAGAAGCGGTTCAAGAAGCCCCCCAGACTCGAGAAGACGTAAAAGCAATGACCACAGATCTAGACGCGAGAGACAAAAAAGTGCAAGTCGCAGTCCAAGTCCATCAAATCGTCAGAAGAAGGAAGAGTTGGAGGGAAGTGATGGCAATAAAAGTCCATTTGAACAGCGTTTGGAAAGAAGGGAGCTAAAACCGGCAGAAGATATAACACCAGAAGAAAGGGATGCAAGGACAGCTTTCTGCATGCAGCTTGCAAGGAACATTAGACCCAGAGACTTAGAAGAGTTTTTTTCGAAAGTGGGCCAAGTTGCAGATGTGCGAATTATATCTGATCGCAACTCAAGACGTTCCAAAGGGATTGCTTACGTTGAGTTTACAGATCGATCAGCTGTGCCTTTGGCCATTAACTTGTCTGGTCAGAAACTGTTGGGTGCTCCGATCATGGTGATGCCTACGCAAGCAGAAAAGAACCGTGCAGCAGCTGAAGCAGAAAAACTGAAGGCTCCACCTGGCCCCACAAGACTATATGTTGGATCCCTGCATTTTAACATTAATGAACAAATGATCAAAGCAATCTTTGAACCCTTTGGAACGGTTGAAAGTGTACAGATGATTTATGATTCAGAAACAGGAAGATcaaaagggtatggttttcttCAGTTCAAAGATGCTGATGCAGCCAGGCAAGCTATGGATCAGATGAATGGTTTTGAACTTGCAGGCAGGCCCATGAAGGTTGGCCCTGTAACTGAGCGAGGAGACTCCTCGTCATATTCATTCCTGGATGATGAAGAGTATGAAAAAGGTGGTGTGGAATTAAACTCAACAGCTCGAGCTGCCCTTATGGCCAAATTATCTCAAGGCCATTCAGCAGGTCTGCAGGTGCCCGGTGTTCCAGCACCAGCAGTTGGGGTACAACAGGCTATGGCTACACCAGTTGCAATCCCTCTTCCTACGCAATGCATCATGCTGCTTAACATGTTTGATCCAACCAAAGAAAAAGACCCAGACTGGGATGCTGACATTCAAGATGACGTATTGGAAGAATGTACCAAATATGGTTATGTGTACCACATTCATGTGGACAAGGCGTCAAATCAGGGAGCTGTATATGTGAAATGTAGCAATGCAGAAGTTGCTGCCAGTGCATCCAAAGCTCTTCATGGGAGATGGTTTGCTGGAAAGCAGATCATTGCAAGGGCTATTCCCCTTGTCAACTACCATACCATGTTCCCTCAGGCGGCGTCTATGACTAAACCATTGCAGCCATCCACTTTTTAAGTGGCCAATATTGTTTGGTCAAATTGTTTGTAGTTTGTGAAACGAGAAGCGCAGATTCCAATTTTTATTTACTGTGCTGTTGATGCTATTTGTAAATATATGTGGAGTAGAAGAACCAGTGGTCCCTGTACTCGAATCACGTCTTTATGAACATTTGTTTATCAGACATCCCCTTCATTGGAAATCCTGCAATTGACAGAGTACGTGACGCGAGTTTCTCGGAGTTCCCGCATGTGCTCGGACTACTTTCGGATTAAACCATATTGTAAGAATAGAAAAAAAGGGTATTTTCAAGTGTATTGATGGAATTGTACACtagaatgaaaattaaaatgattttttcGAATGATCGATA

Protein

Uniprot

Uniprot term	Description
Q5RC80	RNA-binding protein 39 OS=Pongo abelii OX=9601 GN=RBM39 PE=2 SV=1
Q14498	RNA-binding protein 39 OS=Homo sapiens OX=9606 GN=RBM39 PE=1 SV=2
Q8VH51	RNA-binding protein 39 OS=Mus musculus OX=10090 GN=Rbm39 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF15519	RBM39linker	linker between RRM2 and RRM3 domains in RBM39 protein	Domain	Interproscan
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006509	Family	Splicing factor, RBM39-like	Interproscan
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR029123	Domain	Splicing factor RBM39, linker	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48036	SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006397	Biological Process	mRNA processing	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:1990446	Molecular Function	U1 snRNP binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K13091	RBM23_39; RNA-binding protein 23/39	-	Spliceosome	ko03041	deepkoala