Gene detail

Detailed information of ENSSYXP00000025257.1 in Micromussa lordhowensis

Genomic Location: chr1:18255367...18260332
NR annotation: XP_020623733.1, ubiquitin domain-containing protein 2-like [Orbicella faveolata]
Species Micromussa lordhowensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

ENSSYXT00000026613

GGGAGACTTGAGAAAATCTCATTTTTTTCTGATGAACTGACGAGCCTCTTTATAGGCCGTGCGGAAAAGAGAAATGAGGGAAATGAAAGTGATCAGGAAAATGCACGCATGTCCGCTTCTGTTTACCTGTGACGTCACGTATTGAGCGAATATCAATCGCAGTAACTTTTTTCCACGCTTAGAGTCGAGGGAAACTTCCTCGGAGCAGAGGAAAACGTCCTCTGTAGCCGCCGTTTTGGCGGTACAGTTTAATTCACGACTGTGTTAGCCTTTCAACCAGCCATCATTATGGGTGGCTGTATGGGTACATCGCGAGATCCCAGTGTGCGAGTCAGTTCCAGCGATCAATTTGGAAGTACTCCAGGAGTTACTCTGGGTCGCAATCAACCACTGAAGAAAGAGAGAGCGCCATGGACTTCCGAAATACCGCTAACAGAAGGCCAACTTCGTAGCAAAAGAGATGAGTTTTGGGAGACTGCTCCAGCTTTCGAAGGGCGGAAAGAGATTTGGGATGCCTTGAGAGCGGCGGCTGAAACAGACGATCATACCTGGGCTCAAGCAATCGTAGATGGAGCAAACATAACACTTCCCACAGGATCTTTACAAGATGCCTATGATGAACTTGGTAACAGATATGTTATTCCAGTTTACTGTTTAAACAAGCCAACAAATCTAATTAAAGATGAGGACGTAAGTGGCGAGGCCAGCACAGAAGCAGACGAAGAGGAGCCTGTGCCATCAGGAGAAGAATTGTACATTAAACTTCGCTTATCGTCTGGCAAGGACCTGAAAATGAATGTTTATACTTCTGACACTGTActgaaaattaagaaaaaacttCATCAATTGGAAGGAATCGAGCCTTCAAAGCAAAGATGGTTTTATGCTGGCAAAATCCTGACTGATAAGACAACAGTAGGAGAAGCAAAAATCCCCAAAGGTTATGTTGTACAAGTGATTTTGCCACAACCAACACCTGTTGAGAACTAGAAAGCCGTTGGTTTTAGTGGAATGGAATTATTTTCCAAGGATATTTGGCAGGGATTGTATTTCGTGGCAGGTTTTTTACTTGTAGTAATATCAAGCTTAGTTGAACTAAAAAGCCGCACATTAAGATGTAAACTATATAAATTAGCATCAGGAATTCTTGAGTTATCCACAAAGTGATGCTGATGCATGTCTCACAAAAATGAACCTCAGTAAGCTACTTAAGGTATCCCATTTTCTAATTTCTAACACAAACCACTCCAAGTGGTAGAAACAGTTAGCCATCATGGTGGCATAATCTCTACAATATTATAATAGGGAATCCCCACCCCACTCTACACCTCCAGGCCGACAAATGCCTTGAATGATAATGACAAAAGTACACGATTACACTAATAATGGACAAAAATATGTTTATTAAGGAAGTCACAATAAGCTGCAAACCCAATTAGGAGTTAACCAACTTCCATTAAATAAAAAGACTCACAACTCATTCTCAAGGAGAGTACTCAGATATAATAGTGCTGGGGAGGTGTAAAGAGCTTTTTAGGTTTGAAATTGTGGGTCTGGTGACTTGTTTTGTCTGAAGATTTCACTACAACTTGTTTGTGTAAAAGACTTAAGGAGTGCCGAATTTTGGGGAGGTTCTCTCATTTTTGTGGCAAACAATTATCAGttcttttttcaatttgttttaagGTGGATGCAAATCGTGTTAggaatgaactttatttttttgtttttttttagttttttttttttcaatttgttttaagGTGGATGGAAAGCATGTTTGGAATGTTCTTTTTTATGCATGGAAATAGAATGTTTTTCATTATGTTCTGGGCTGCTGGACTTTTTGGGGTCTTATAGCATGATGGGAACTTCATTGGGTGTGAGGAGTTTGCCTGCCATTTGCTCTATCCTATCATTATTATACTTGAGTACCTCCCATGGGGAATCATCAGTCCAATCTGAAGTAAAATGTTTgcaaaataccag

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5EAE3	Ubiquitin domain-containing protein 2 OS=Bos taurus OX=9913 GN=UBTD2 PE=2 SV=1
Q8WUN7	Ubiquitin domain-containing protein 2 OS=Homo sapiens OX=9606 GN=UBTD2 PE=1 SV=2
Q640W6	Ubiquitin domain-containing protein 1 OS=Xenopus laevis OX=8355 GN=ubtd1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008889 (this species only) · gene tree & orthology
Ubiquitin family	ULD\|UBL\|NEDD8 · all ubiquitin genes in this species
Ubiquitin family	ULD\|UFD/UBQ\|UBQ_Other · all ubiquitin genes in this species
Ubiquitin family	ULD\|UFD/UBQ\|UBQ_PIM · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00240 all species →	ubiquitin	Ubiquitin family	Domain	Interproscan
PF16455 all species →	UBD	Ubiquitin-binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000626 all species →	Domain	Ubiquitin-like domain	Interproscan
IPR038169 all species →	Homologous_superfamily	DC-UbP/UBTD2, N-terminal domain superfamily	Interproscan
IPR032752 all species →	Domain	DC-UbP/UBTD2, N-terminal domain	Interproscan
IPR039869 all species →	Family	Ubiquitin domain-containing protein 1/2	Interproscan
IPR029071 all species →	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan
IPR019956 all species →	Domain	Ubiquitin domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13609 all species →	UBIQUITIN DOMAIN CONTAINING 1 PROTEIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSSYXP00000025257.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.