Gene detail

Detailed information of ENSSYXP00000026296.1 in Micromussa lordhowensis

Genomic Location: chr1:40998721...41019460
NR annotation: XP_020615500.1, tyrosine-protein phosphatase non-receptor type 13-like isoform X3 [Orbicella faveolata]
Species Micromussa lordhowensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ENSSYXT00000027677

ATGCACAAGACTCACACTGGTCTAAGTGATGCTCAGGCGGAGATCGAGTACTTAAAGGAGGCACAGAAACTACAGGAATATggaattatatttaacaaagttTCCAAGTATAAGAAGGACAAGAGAGGTAGTTTCAGTTTAGGGATCAGCGTGAGAGGACTAATTGTTTATGAGGAACGAGGAATCGTGAAAAGTCCAACGTTTCGTCATCCATGGCAAAACATCAAAAGAATGGCATTTCATCGGAGACGGTTTTTTATCGAAGCACATGGTGACCCGGAGACATCCAAGATGGTGCTCTACACATGCAGCTATAAGAAGTCGAGGTATCTACTAAAAATGTGCACGTCGTTTTACAAGTTCCAAATGATGATGGGGATGAAATTATCCAGCCTCAAGGAATATCCAAAAGATGGAGTGGTGAGAATGAACGGAGTGGTGAAAACAGACGAATCCGATTCTCTAGCCGGGGACATGCCAGAATCAGCAGTGAGTAAGCCTGGGCAGGAGTCAGCGGTCATACAACCACCTGGGGTAGGGCCTGCGATTCATCTGAATGGGTCAGCGTGCCCAGTGCAGGAAGATCAACCAGTACAGGTCAGCGTCCATCCTGTCCAGCTGACGAAAGTCAATGGAAGTCTGGGACTCAATATCATTGGTGGTATAGAGTTGGGTGGTATTTACGTCAAGACACTGGCTCCCGAAGGACCAGCATCCCTCAGTGGCAAAATCAACATTGGTGACAGAATCCTCGAAATTAACGGTCACAGCCTCGAAGGTTTATCAAGACAAGAGGCTGTAAACATTTTAAGGACAGCACCTCACGTTTGCACAATGCTGATCGAGAGCTGTGTGGCCGCTCCTGCAACTCCAAATGGCAAGCCAGCAATGCCTGGATCCGAGTCCGCGTCAGCCTTTTACCATCCAAACAGACAGCAGCAGATGCAACCCGTGATGCAACGCCAGCCGTCATTGGAATCGCAATACTCGTCAATGCAGCAGCAGTTTGTGCCAAGTCAAAGTCACCAGATTGAAGACATAGTTGCAGATTACATTGCCATTGAAATTCCTAAACTCAATGGAAGTTTCGGTCTAAATGTGACGGGTGGGCCAGAACTCGATGGAATTTACGTGAAGTCTTTACTACCCGGAGGAGCGGCAGAGGCATCAGGGAAAATACGAAACGGTGACAGAATAGTAGAGATAAATGGAGTGGCAATGGAAGGCCTCAATCGCAAACAGGCAGTGGAGTTGTTACGGCGCTCTGCAGCTACTGCAACACTTGTTATAGAGCGCTACAGACAACCAGAACCAGAAGGCCCTCAGCTGGAAGATTTGGAAGATCTTCTAAGGACGTCGCCAAATTGCATCCTTGTGGAGTTACAGAAAATGAACCATTCGTTTGGATTTAGTGTTGTGGGTGGGCCAGATTTCGGTGGAATTTTTGTTAAAACCATCAATCCAAATGGAGCAGCGGCAATGGATGGCAGAATAGGAATAAATGACAGAATAGTTGCTGTTAACTGTGTGAACTTAACAAGAGCCACACGGCAAGAGGCGGTTGACGCCCTTCGGAACTCTCCAATCATCGCTCAGCTTGTTGTGGAAAAGGGCACAGCCGAAGATCTCCTGACAAACAGTAGCGGACCACCTACACCCCAGGAGTCAAGATACGGAGCTGTACAGTACAGTCATTACCATGCCAGCTCGGACAGCTACAATGACTACAACATGGACGATCTACCGTTTGAAGTTTATCTTACAAAAGGTCAAAGTGGACTGGGTATGAGCCTCACAGGAGGAGATAATGGAGCTCCAATCTACATTAAGAAGCTGGTTCCAGGAGGTTCGGCTCTCTTGTCAGGGCAGCTCCAAGTCAATGACATCATTCTTCAAGTAAACAACAAGAATTTGGATCGAATGACCTACAGAGAAGCTCTTTCTATCCTTCGTAACTGCCCTTCAGAAGTTCGACTACTCGTACAAAGACCCCGGATGTCCTCACATCCTCCTTACCCAGGGTACCGTGGGGGCAGCGACAGAGCCAGTGTTGATAGTTACGGAAGCTATAGCAGCATGTCAAGTATTTTTTAA

Transcript

ENSSYXT00000027677

GCGATCGCCAAACTCACTGCTTCTTACATAAAGAAACATCTCCCTTCAATGCACAAGACTCACACTGGTCTAAGTGATGCTCAGGCGGAGATCGAGTACTTAAAGGAGGCACAGAAACTACAGGAATATggaattatatttaacaaagttTCCAAGTATAAGAAGGACAAGAGAGGTAGTTTCAGTTTAGGGATCAGCGTGAGAGGACTAATTGTTTATGAGGAACGAGGAATCGTGAAAAGTCCAACGTTTCGTCATCCATGGCAAAACATCAAAAGAATGGCATTTCATCGGAGACGGTTTTTTATCGAAGCACATGGTGACCCGGAGACATCCAAGATGGTGCTCTACACATGCAGCTATAAGAAGTCGAGGTATCTACTAAAAATGTGCACGTCGTTTTACAAGTTCCAAATGATGATGGGGATGAAATTATCCAGCCTCAAGGAATATCCAAAAGATGGAGTGGTGAGAATGAACGGAGTGGTGAAAACAGACGAATCCGATTCTCTAGCCGGGGACATGCCAGAATCAGCAGTGAGTAAGCCTGGGCAGGAGTCAGCGGTCATACAACCACCTGGGGTAGGGCCTGCGATTCATCTGAATGGGTCAGCGTGCCCAGTGCAGGAAGATCAACCAGTACAGGTCAGCGTCCATCCTGTCCAGCTGACGAAAGTCAATGGAAGTCTGGGACTCAATATCATTGGTGGTATAGAGTTGGGTGGTATTTACGTCAAGACACTGGCTCCCGAAGGACCAGCATCCCTCAGTGGCAAAATCAACATTGGTGACAGAATCCTCGAAATTAACGGTCACAGCCTCGAAGGTTTATCAAGACAAGAGGCTGTAAACATTTTAAGGACAGCACCTCACGTTTGCACAATGCTGATCGAGAGCTGTGTGGCCGCTCCTGCAACTCCAAATGGCAAGCCAGCAATGCCTGGATCCGAGTCCGCGTCAGCCTTTTACCATCCAAACAGACAGCAGCAGATGCAACCCGTGATGCAACGCCAGCCGTCATTGGAATCGCAATACTCGTCAATGCAGCAGCAGTTTGTGCCAAGTCAAAGTCACCAGATTGAAGACATAGTTGCAGATTACATTGCCATTGAAATTCCTAAACTCAATGGAAGTTTCGGTCTAAATGTGACGGGTGGGCCAGAACTCGATGGAATTTACGTGAAGTCTTTACTACCCGGAGGAGCGGCAGAGGCATCAGGGAAAATACGAAACGGTGACAGAATAGTAGAGATAAATGGAGTGGCAATGGAAGGCCTCAATCGCAAACAGGCAGTGGAGTTGTTACGGCGCTCTGCAGCTACTGCAACACTTGTTATAGAGCGCTACAGACAACCAGAACCAGAAGGCCCTCAGCTGGAAGATTTGGAAGATCTTCTAAGGACGTCGCCAAATTGCATCCTTGTGGAGTTACAGAAAATGAACCATTCGTTTGGATTTAGTGTTGTGGGTGGGCCAGATTTCGGTGGAATTTTTGTTAAAACCATCAATCCAAATGGAGCAGCGGCAATGGATGGCAGAATAGGAATAAATGACAGAATAGTTGCTGTTAACTGTGTGAACTTAACAAGAGCCACACGGCAAGAGGCGGTTGACGCCCTTCGGAACTCTCCAATCATCGCTCAGCTTGTTGTGGAAAAGGGCACAGCCGAAGATCTCCTGACAAACAGTAGCGGACCACCTACACCCCAGGAGTCAAGATACGGAGCTGTACAGTACAGTCATTACCATGCCAGCTCGGACAGCTACAATGACTACAACATGGACGATCTACCGTTTGAAGTTTATCTTACAAAAGGTCAAAGTGGACTGGGTATGAGCCTCACAGGAGGAGATAATGGAGCTCCAATCTACATTAAGAAGCTGGTTCCAGGAGGTTCGGCTCTCTTGTCAGGGCAGCTCCAAGTCAATGACATCATTCTTCAAGTAAACAACAAGAATTTGGATCGAATGACCTACAGAGAAGCTCTTTCTATCCTTCGTAACTGCCCTTCAGAAGTTCGACTACTCGTACAAAGACCCCGGATGTCCTCACATCCTCCTTACCCAGGGTACCGTGGGGGCAGCGACAGAGCCAGTGTTGATAGTTACGGAAGCTATAGCAGCATGTCAAGTATTTTTTAAACAATGTAGACAAGTCTGTAGATTTGTTGGAATGCTGTACTGCTACGGTTATATCACATAAATTGTAGCTTGTTCTAGCTCGATAAAACAGTTACCCTACACTGAACCGAAGCAGCGGGAATGTAATCCAGGATTCTGGTTATAATTATCGTTTATAAGGTTGGCTGATCAAAAAGGTCACAAAAGAGATGGCGACACGAGGAGGCAGAGAGTAAGATCTTTGACAAGACTATCATGCCGAAGAATTGTCGTATAAAGATATCCTTTAAGGGTAGAACATAGCGACACTCGTTAGTTTTAAAGGCTGGACGTTTTCTATAATAACAAGAATAGTTAAATATTATCAATGACGTGCAGCGCTTAGGTCTACAAACCCAGCGTATCAGGCAATGCGCCGGATGAAGGTTCAAGTCTGGGGAGCCTGGGTCGTGTAACTACATGGATATACCGGCATTCGCTGATTACCGTAATTTTCAGTCTAGAGTGAGATATTTTTGTTCGAAAGAAGCTGGTCTTTGATAAAAGGTTATATGCTTGGGCAAGTATaatttttgtttatcttttttttttaaacgtcATAACCATTGCTTATTGATTTGCGCGTCATGTGCAATTACCATTTCTCATTGATTAGTAGTCATTTCTCATTGACTACTAGTGCTCGTCGGTTTTTAATCACTTTGGCTGTCCTGTTCAGTTCAAACCACCGAGCGTAAAGCATGGTTATAAACTGAGAATAACGCCATTACTGAATAAGTTTACTTTGAAATAAATTCCTGTCCATTACCCCCAGAAGGTCATCGCAAAAAGGGAAGTGAAGCTACtttgaaaacaatta

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O55164	Multiple PDZ domain protein OS=Rattus norvegicus OX=10116 GN=Mpdz PE=1 SV=1
Q8VBX6	Multiple PDZ domain protein OS=Mus musculus OX=10090 GN=Mpdz PE=1 SV=2
G5ECY0	Disks large homolog 1 OS=Caenorhabditis elegans OX=6239 GN=dlg-1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002192 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00595 all species →	PDZ	PDZ domain	Domain	Interproscan
PF09380 all species →	FERM_C	FERM C-terminal PH-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036034 all species →	Homologous_superfamily	PDZ superfamily	Interproscan
IPR001478 all species →	Domain	PDZ domain	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR018980 all species →	Domain	FERM, C-terminal PH-like domain	Interproscan
IPR052074 all species →	Family	Non-receptor Tyrosine-protein Phosphatases	Interproscan
IPR019748 all species →	Domain	FERM central domain	Interproscan
IPR000299 all species →	Domain	FERM domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46900 all species →	TYROSINE-PROTEIN PHOSPHATASE NON-RECEPTOR TYPE 13	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005856 all species →	Cellular Component	cytoskeleton	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSSYXP00000026296.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.