Gene detail

Detailed information of ENSSYXP00000026895.1 in Micromussa lordhowensis

Genomic Location: chr1:18265830...18311760
NR annotation: XP_020623730.1, erythroid differentiation-related factor 1-like [Orbicella faveolata]
Species Micromussa lordhowensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ENSSYXT00000028281

aagggtttacaagggaatacaagggtttacaggggaatacaagggtttacaggggaatacaagggtttacaggggaatgcAAGgatatacaagggtttacaggggaatacaagggtgtacaagggtatacaggggaatacaaggGATACCGACTTAAATGTTGCTCCTTCAAACTGGTTGCGAGATGGAAGGTTTTCTGATGTCAATCACCACAGACGGGACCCTGTCGAATTCTCAAGTTTTGGCATGGCTCACAGTTTTGTTGATTCTATTGGTGATGTCGATGTGATATCTGATGCTGAGAACATCAAGAAGTTACTCAAAATTCCCTATAGTGCCAAGACTGAAGTCAGCTTAGCAGTTCACAGAGTAGGACCAACACTGCTATTGGATTATCTTGATGTTCCATCACTAATTTCCTATGCATCTCAGGAAAGAGGTGACAGTATTCATCCCAGGTGGCTTTATGACTTTTACTGTGAACAAACTGGAATTCCAAAGGACGCAAGCTTTGAacgtaaaaagaagaaaaaggatcAGGCAAGACTAAGACACATTTTTTCAAAATTCCTGCATTACAGCATTCAGAATCTCAATAAAGATGCTTCGACAGACCCCAGCTTTACAACATACACTGAACCCACAGCCACACACTTCGGGCACACAATGGATAGTGACACCTACAATGAAAGTGAAGACTCGGCATGCAACTATGCAGTTCCAGGCCCAGCCATGGACCCTGCTAAGGAGGGCACAGATTTGTTTGCACCTATAATCCTAGAGAACGATTCACAAGAAGAGCCTGTTCTACCTCAGCTTCAGCAGGACTCTTCCTTTCAGCACAATGTTCTGTGGGAGTTTGAGGACATTCAAATGCTTGTTGGATCCAACCTTCCAATATTTGGAGGTGGCAAATACCCTGCTGTTAGCCTGAGGCTTAGGGAGTGTGGCAATCCTATCAATGTACTGACAGGGCTGGATTACTGGTTGGATAACTTGATGTGTAATGTTCCAGAGGTCGCAATGTGCTATCACTTGGATGGGATTGTGCAATATTATGATCTATATAAAACAGAGGAACTGCCAAACTTGGAAGGAAGCAATTTCTCTCCAAAGGTTATCAAGGACGTAGCACAAAATATCTTGTCTTTCATGAAGTCAAATTGTACTCGAGAAGGTCACACCTACTGGTTGTTTAAAGCAACTGACAGTGACGTCATAAAGTTGTATGATTTGAGCTCAATCTGTCAACAGAGGACGGACGACAAGACAGAGAACTTGTTTACTGTACCTGTGGCTATGCTGTTTTACCGGTCTGTATATCGCGTTTTCATATTAAACTATTTGAGCTATTCAGTGGAACAAGGAACAGCCCGTCAGTTACTGAATAACTGCCTCCTCCTTCTTAACAATGAGAAATTCCCAGAGGTAATCCTTCTGTATGTTTTTTCTAAACAATTTCTCTTGTCTGAACAGGTTTCCAAGCCATTACCAAGCAATGTGGAAGAGAGATGTAAGGTGGCTCTGTTGCACATCGTCAAGGGCCTTTCGTGTGTCAAGAAGCATTTATCAGAAAGTACTTCTCAAGGGGACGTCATTAGCGCAAGTAGCAGCTCCTCCACGGAATGCTCCTCCTCGAGCACCCAGTCCCCAACTGCCACAAGCGATGACAATGCATCTAGCCCCAGACCTCTGCAAGCTGTTGTTCCTACATTTGCAAAGCACATTCATCCGTACAAGAAAAAGAAGTCACCACTGGTCCTTGTACGACCGCCTCGTTGGCAAGAGAAGACCGCTGGATTACTGTTCTACAAAGCAGCGGCAGTGTATCACTCGTTAGCTTGCACATTCAATTCAAACGGAAAGTTTGGCCGTGGTTTAAAGAACTGTAAACTTGCATTTAAGTGCCTCGAGGCTTCCCAGATCTTCAGTGTGGAATCTGACGTTAAGAAAGGTGACCAGTTGTTGATCTCTGTGTTGTTTGTGTGTGGGGACTCGTACTTTATGCTGTCTAAGTGTCAGGGGAATTTAGCTGTTCATCAGGAGGATTATCAGTTTCAATCCGAAGAGGACGCGTTCATTTCTGAAACGGTGGAGGAGTGTATTGCTGGTCAAGGAGAGCATTCTTCCAGTGTCAATGTTAGTGTATATGATGCAGCTCTTCAGTTAGCGACGACAGACACTAAATTGGAGCTGATGGTCAACCTGACGCGGCGTCTGGGAAATGCCAAGAACGAGCTGGGCGTGCTGTACATGAATAAAGCCGCTGCCATGATGGACAGCGGCACAGATCCTTCCTTCCGGGAACGAGAACTGTGGAAGAGAAGCTTCTCTTGTTTTGAGAGCGGTATTCGTACTTTTGACGTCACAGATGACAGTGCGAACAAGGCATTACTATTGTCCAATTTAGGCCGATTAATGCGACTGTGTGCTCAGGGCGTAGGTAGCGTGGAAACTAAGCTGACCGGAAGAAGGGGAGAGTTCAGCCAAGAGGAGAGGAGTTATTTCAACAAGGCCTTTGAGTTCTACAACAGGGCGCTTCGCTGTTTGGCAGAGAGAAAAAAGAGCCCAGAAGTCTGGGACACGGTCACGTGGGAACTTTCAGGGTCGTACTATTCGATGGGCACGCTGCTTCAGGATTATGCTCCTTTATCATCTTATGCTCAGGAGCAGGTTGAACAAGAAGTTACTGAGCTGATGATGAAAGCACTCCGGTTGTTGCAGCCTACTGGATCTCTGCTGTATGTTAGAAGCAGATCTACACAGCAGCTGTATCATCGCATTGCCTCTATACACCATCGGCTGGCGTCTCTTTACCATAATTCTTATAGAAACCAGGCTGTCGATCACTCAAAGAAGAAAGCGCGCTCTTTAGCTGAGCTTCATTACAGTAAGGCTGTGGGGTGTTTACAACTAAAACAGTTCCCATGTGAGTGGATACGGATTCATCTGGAACAGGTCGCCATGTCTGAATATCATGTGACAACCTACGGTGGATCAGCGGCAGCTATTCGAAGTCTACAGGCAGCTCTGGAACATTTGTTCGATACTAGGAGAGCTTTAGAACACTTAGGGACGTTAAAAGATGCTAAGGGGAACAAATGTGAAACTGGAACAGGCTCAAAGAGTGAAGAAAGCTCTAAGGTTGACGCGAAAGATGACTCTGAAATAAAGTGGGAAGAACTGCAGACATTGATTCCGATTTTGGAATCGCGTCTTACAAACGTTTTGAAAGAACTCGTAAAAGCGAACAGTCTGCTCAAGAACAAGGGAAAGTCAGGCAGGGACTGGGGAGGACTGGAAACGGCCAAGCACATGTACTCTGTTGCATTACGGAGCAGCAGTACTAGCGGGGATGAAGATATTGTTAAAAAATGTCAAAGATTAGCAGAAACGCTTCAAAAACATGTGGAAAAACGATCTCCCGTTGGTGTTTATGAAATCAGGGCCGACAATGATGGCGTTACATCCCTCCAACTAAAAGGAACAGAGATAGAACCTGCGGAAGAAAACAATAATCTGGACCCGAAGAGTCGTTCCACTCAACACATCCAGGATTGCATCGCTTGGGTGGACGCATATTTCTCGAATTCACCTTTGGCGAAAGTTAAATTACCAGCTCTGAACACCAAAGAACTTGAACTGAGCAAACCGTTTTGCTGTAGAGTGTGGAAGATTCTCAAAGATCGAGTGAAGGCTGGAGAAACCGTATCTTACGGAGAGCTTGCCAATATGGCAGGCAACCCCAAGGGAGCCAGGGCTGTGGGAACGGCAATGAAAACAAACCCCATCTCCCTCATCGTTCCTTGCCACAGAGTGGTCAAAAGTACTGGAGATCTTGGAAATTATAGCTCATATAATGGAGTTGAAACGAAGAAATGGCTACTCCAACACGAAAACGCTGTCAATTAA

Transcript

ENSSYXT00000028281

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q3B7T1	Erythroid differentiation-related factor 1 OS=Homo sapiens OX=9606 GN=EDRF1 PE=1 SV=1
Q5R9R1	Erythroid differentiation-related factor 1 OS=Pongo abelii OX=9601 GN=EDRF1 PE=2 SV=1
Q6GQV7	Erythroid differentiation-related factor 1 OS=Mus musculus OX=10090 GN=Edrf1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003895 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01035 all species →	DNA_binding_1	6-O-methylguanine DNA methyltransferase, DNA binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036631 all species →	Homologous_superfamily	Methylated DNA-protein cysteine methyltransferase domain superfamily	Interproscan
IPR036217 all species →	Homologous_superfamily	Methylated DNA-protein cysteine methyltransferase, DNA binding domain	Interproscan
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR014048 all species →	Domain	Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding	Interproscan
IPR001497 all species →	Active_site	Methylated-DNA-[protein]-cysteine S-methyltransferase, active site	Interproscan
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15000 all species →	ERYTHROID DIFFERENTIATION-RELATED FACTOR 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003908 all species →	Molecular Function	methylated-DNA-[protein]-cysteine S-methyltransferase activity	Interproscan
GO:0006281 all species →	Biological Process	DNA repair	Interproscan
GO:0045893 all species →	Biological Process	positive regulation of DNA-templated transcription	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSSYXP00000026895.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Micromussa lordhowensis tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Micromussa lordhowensis, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →