Gene detail

Detailed information of ENSSYXP00000027738.1 in Micromussa lordhowensis

Genomic Location: chr1:43488899...43495661
NR annotation: XP_020616190.1, alpha-dioxygenase 2-like [Orbicella faveolata]
Species Micromussa lordhowensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ENSSYXT00000029180

ATGGATCCCGGACTAATTTACTTAGCACAATTGATCAGGAGATacttggtcagcggtcacgTGTGGTGGCACATGCCGCTGGTATTGACGATGGCTTACACGTTATTAGTGAGAGAAAGATTGCTGTATAATGCTCTCTTTGACTCCTATCCAAATCCACTGCCAGGGGTCAAAATGCGCTGTAATGATCCAGTGCTAGGAGATGGATATATAGGCTGCATTAAAGCATCTATGCTGATGGATTATGGATTCAGTGAGCAGCATTTAGCTTCAGTAACTCCTGAGGGTTGCATTGCCACGTGTAAAACTAACATGTTTCCCTATGCAGCTCTTTACAAGAGCAGGAGATGCTATTGTGGTATGGGGTACGAGACAGAAGCGATGGTTAGAGAGTGTAAATGTCGACAAAAGTGCACAGGGAACAAAAAGAAGCGATGTGGGGGTGGTGAACACGCTTCCCTTTACAATACGTATTTCTGTACAGAGAGAATGAAAGCAGCTCGGACCGTAGATGGAACGTGTAACGATCTCAACAACACTGCTGCTGGAAGCAGGTTTTACCGGTTCGGCAGGAACGTCCCTTTGCAATATACCTACGTGGACGAAACACGTCTCCTTCAACCCAATCCACGAATTTTAGCAAGAAAGTTGTTACAGCGTAACAACTTTCTTGAGGTTCCTTGGTTGAATCTGTTCGCGGTGGCTTGGGTCCAGTTTATGGTACATGACTGGTTTGATCATGGTACGCCTATCACGGAACGCCGAATGAGAGTTCCCCTACAACAAGATGATCCGCTACGTTCAAAGATGAAAGggTTCATGAAAATTCTTCGTACTAAACCAGACACGTGTAAAACTAACTATTATGAGCCACCCACCTACCAGAATGACGTCACACATTGGTGGGACGGCTCACAGCTGTATGGCAGTGACAAAGAAACGCACGCTCGCGTTCGCGCCTTCGTTGACGGTAAACTAAGAGTTGAAGATGATGGATTACTGCCTGTCGATCCGAAAACCAATATCGACATCACTGGATTCTCCAAAAACTGGTGGGTTGGATTAAGCATTATGCACAACCTTTTCACAAGAGAGCACAACTTAATCTGCGACATGTTGCTGAAGAATCATCCTACTTGGTCAGATGACCTCCTCTTTCAGACGGCAAGGCTCATCAACACAGCTCAGATTGTTCAAATCCACACCCGAGAATGGACTGCTGCGATATTGAACACAGACTTCATCCACGagtcactttttgcacagtggTACGGCAAGCTGAGCCCAAGGatcatgaaaataataaaggGAATGAACATTACCTTACAAGAGGACAGCTTCCCCACACACCAAGGGAACCCCCCGGACTATAGAGGCGTTCCATTCTCCCTGACCGAGGAATTCGTTTCGGTGTATAGAATGCATTCGTTGTTGCCAGATACCATTGCCATTCGTCAAATGAATACAGGTCGTTTTAATGGAAAGGCGTACAGCCTTCCTAAGTTTTCTTTCGACAATGCTCGCACTGTGTTCGATGATAATCAGCTGGAGGACATCCTGTTCACTTTTGGAGTGGAGAAATCAGGGCAACTCGTGTTACATAACTATCCTACAACTCTTATGGGGCTAAAGATACCAAGACATCAGAAAGGAGGACGATTTCTTGACCTGGCAACTATTGACATTTTGAGAGACCGCGAGAGAGGGGTACCACGGTACAACCAGTTCAGACGGTTACTGAACTTAACAGTGCCTGATACCTTCGAAGAACTCACCAATGATACCGTGACTGCCGCAGAGCTCAGAGAGGCGTATGACGGAAACATCGAGGATGTGGACCTCCTGATTGGCTCACTGGCCGAAGCGCGTCCTGAAGGGTTCGGCTTTGGAGATACTCCGTTTCATCTTTTCCTGTGTATGGCCAACCGCCGTCTGAAGACGGACAGGTTTTTGACCATTGATTACAAAGAAGAGTACTACACTAAAGAAGGGCTAGATTGGGTTGAAAGCTCCACCATGAAGAAAGTATTGCTAAGAAACTTTCCTGAGGTACCCGGCCTGGGTACCTCCATGCAGAATATAAAAAACGCCTTTTATGTGTGGAATAAGCAATAA

Transcript

ENSSYXT00000029180

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A0A2G3AC72	Alpha-dioxygenase 1 OS=Capsicum annuum OX=4072 GN=T459_06886 PE=2 SV=1
Q9C9U3	Alpha-dioxygenase 2 OS=Arabidopsis thaliana OX=3702 GN=DOX2 PE=2 SV=1
Q2QRV3	Alpha-dioxygenase PIOX OS=Oryza sativa subsp. japonica OX=39947 GN=PIOX PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002351 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03098 all species →	An_peroxidase	Animal haem peroxidase	Domain	Interproscan
PF01822 all species →	WSC	WSC domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR034815 all species →	Family	Alpha-dioxygenase	Interproscan
IPR019791 all species →	Family	Haem peroxidase, animal-type	Interproscan
IPR002889 all species →	Domain	Carbohydrate-binding WSC	Interproscan
IPR050783 all species →	Family	Oxylipin biosynthesis and metabolism	Interproscan
IPR010255 all species →	Homologous_superfamily	Haem peroxidase superfamily	Interproscan
IPR037120 all species →	Homologous_superfamily	Haem peroxidase domain superfamily, animal type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11903 all species →	PROSTAGLANDIN G/H SYNTHASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan
GO:0004666 all species →	Molecular Function	prostaglandin-endoperoxide synthase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0016702 all species →	Molecular Function	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	Interproscan
GO:0019371 all species →	Biological Process	cyclooxygenase pathway	Interproscan
GO:0043005 all species →	Cellular Component	neuron projection	Interproscan
GO:0004601 all species →	Molecular Function	peroxidase activity	Interproscan
GO:0006979 all species →	Biological Process	response to oxidative stress	Interproscan
GO:0020037 all species →	Molecular Function	heme binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSSYXP00000027738.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Micromussa lordhowensis tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Micromussa lordhowensis, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →