Gene detail

Detailed information of ENSSYXP00000027833.1 in Micromussa lordhowensis

Genomic Location: :...
NR annotation: XP_020616084.1, RNA-binding protein with multiple splicing-like isoform X1 [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

ENSSYXT00000029282

CGGGGGAAAGAAAATTGTTACGTCATGCAGAGTTACCTGTTGGTTGTACCTTGCAGCTGCGGGGAATAGCAGAGGCCATTTTAATATTGTAGAAGGTTGTAATGCTTTTCATGTTGTTACACTGCACGTTACAAGCACCTCTGCACCTAAAGCACTAACACTGTCACTGAACCGGGCGAACCTCGCGCACAGCACTTGTGAGGTGCGAATAGGGCCATGGATGTAAAATCGACTTCTGATGACGAGGTTCGGACCCTGTTTGTGAGCGGTTTACCCATCGATGTTAAACCTCGTGAAATCTACCTCCTTTTCAGAGGCTTCAAGGGTTACGAAGGATCACTGCTAAAACTTACAGATAAACAGGGCAAGCCTTCGCCTGTAGCGTTTGTCACATTTGAAAGTagagaagaagcagaagaagctAAAGCTTCTTTACAGGGTGTACGATTCGATCCTGATGTCTCTCAGACGCTTCGTTTGGAGTTCGCTCGTTCCAATACCAAAGTATCCAAACCGGTGAATAAGCAAGCCGTATTGACTTCTGCTCCGGCCTTTTATCCCCGGGAGCCCCAGCTCAtGCATGCAGACCTCGCTGCAGCTGGATTTTTGCCGACACCGGAACCAAACTTAGCCTACCCTGCCCCCATATTTAATGACATCATGACAGCAGCTGCAACAGCTCAACATGCGTTCAACCATCATCCTGCAAGCATTCTACAACTGCAGGCTTTTCCTCAGCACCATCATCCTATCATTCCTGCTTTGACGTCACCGACAGCGCTTCACCACATGGCAAGCCTGGGAAACCCGCCATGTTCGACGCTATTCGTAGCCAACCTTGGTAAAGGAAGCTCCGAACAAGAACTGAGGGATCTATTTGCAGAGTTAATAGGATTTCGACGGCTAAAAATGCATAGTAAAGGAAGCAGTCCCGTTTGTTTCGTGGAATTTCAGgATGTTTTTTCGGCGACTAACGCAATGCACACTCTTCGAGGCCGGAATTTGCAGTCCTCGGCTGAAAAGGGGGGCATAAGGATAGAATACGCAAAAACCAAAATGGGCGAGGGTCGGGTTATTATTGATGGCTTTGGTGCAATACCGATGCAAATACAGCAATGAAACCACAGCCGAATGAACGCAAGGCTAAGACGAGAGCTGCTCAATGAAAAAAGAGGCAAATTTGGGTCAAACGTGGGCATTCATATCCTGTTGAAAAATGTTGAGAACTGTGGAgatctttgtttttaaaaatagttCATAACAGttcttgaaaaataaatttcctgCGGAATAAACCTGCCGAAATCAATACAGTTTCCTGCCTTTAAATAAGGTAAAAGGGAGAATAAGTTACGATTTTTTATGTTTGAAGAAGTCTTTACGCTGGCAAGTAAGGTTGTGTTAAACTTTCGAAATGTCGAGTATCTAAGCGTATTGCGAGTCAGTAGCATACGTGGAGCTGTTTCTTTTCAGGGTAAGCAATTTCATCTCGGATCTCAGTTTGCAGAAAAACTGTGTGTGATGAAATTCTAAGTCATAAGAACAATACAAGGATTCCTTTCTttcttgaaaaaatatttcctttttattgatgtttaattttatttttcttgagCGTCTATTTTCTTATAAGAGACGCAAAATGTCTCAAAATTCCAGTTGAGGAGGTGACTGTTTTTAAGTTATTTGAATGAGGAGTGATTGGTTTTCATATATGTTTACAGGTTTCAGTCGAAGttgtaaatattattattgttattaatattttacattAAAGTATTTAATGAAACCATTAAATAGTTGTTAATTTGTTTGCAACTCTGTCGTTTTTCTCAATCCATGATCTACACCTTTTCTACAAAGGGTTTTCACTAGGTTTCCAAATTTAATCCCTCCCTATAAACAACCGATAGCATACGGTTCTTCTTAGCCTTAAATACACACCGGCAGAGGGCTCCCTCGCCAACTTGATCGGTTCTAACTTTAGCTGAAGCACTAAACAAATGCTAAATAAAATGAACTTCGAGTCTCGAAACCTTGTCTAAAATTTATCTCATGACGTTATGGCATGACgtcattgtttgtattttgacaggcatgtttttcaaaatgttattt

Protein

Uniprot

Uniprot term	Description
Q9WVB0	RNA-binding protein with multiple splicing OS=Mus musculus OX=10090 GN=Rbpms PE=1 SV=2
A0A8I6G705	RNA-binding protein with multiple splicing OS=Rattus norvegicus OX=10116 GN=Rbpms PE=1 SV=1
Q01617	Protein couch potato OS=Drosophila melanogaster OX=7227 GN=cpo PE=2 SV=4

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10501	U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K25091	RBPMS; RNA-binding protein with multiple splicing	-	Spliceosome	ko03041	deepkoala