Gene detail

Detailed information of ENSSYXP00000028183.1 in Micromussa lordhowensis

Genomic Location: chr1:682899...706228
NR annotation: PFX21577.1, DNA polymerase nu [Stylophora pistillata]
Species Micromussa lordhowensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ENSSYXT00000029666

CAGTTATCAAATATACAAAACCAGAATCTGTCATTTCAAGCACCAACTCGTTCATCAAGGTGGCAAAGCCAGTATGAACCTGTAGCTTGGAAACAAGTGTTAGAAGGTCCTGGAGAATGCAAAAATCCTATTTTACTGTCAGAACCAGGCCAGAAAGTTGTCAGAGCTATAAGAGAAATTTATGGACCACGTCAAGGCGTGACTAATCAGTGTACCCCACAACAAGGTTAtttgtcttcaccccaAAGAAATACTGGAAACGCAAACAAAAGGAAAGCGCAACAGAGTCCAATCACCAGTTATTTCAAAGAAAGGAAAACTGTTCAAGGGAACGAGGCCAAGAGAGCAAAACAGGCGAACACAGGGAGTAAAAATCACCTTATGAAAGTCTCGTTGATGAGTCCGGGTAAAAGAGAGGTGTTTGAACAGAGCCTCAAATCAGCGGAAGAGGTCGCTTGTACTCTGGCTTATGAGGACGGGTGGTCTCTGCTAAGGCCGAAGAAACAACAAGCTGCTTGCCTGGTTATTGCACTACCTTGGTCTGAGAAGACTTCAAGTACCACTGAGTCTGCACAAGGACTTAAAAATCGACTAAGGTTCGTGGAGATTCCTGTAGACACAACGGAGGATTCTTTAACAAACTGGTGCAGGAGAGTCGTGGATGATCTAATGACGTCATCATCGACAAGAAAAATTTGCTTTGATGCCCAGAAAATAGTTCGGTATCTTGTGGAGACAACCCATTATGACGTCAGAAAAGTTTGTCTCAAGTGGCGTCTTCTTGATCCTAGAATAGCTGCTTGGCTACTGAGCCCGGACCACCCGCCAGGAACCTTTGCAGAAGTTCTTACATCCGTCCAACTCAGACTTCCAGAGAGTGGGGAGGAGAATGATTCAATGATTTGCCAAGATGTTGCGATGCTTGGACCTCTCATGGTAAAACAATATGGGAAGCTTAAGGCCCTGTCACTCTGGGACTTATTCATCAACATCGAGACGCCGCTTTGTTCGATGTTAGCAGTTATGGAAACTCAAGGAATCGAAATCAACTCTCAAGTCTTGATTGAAGCCAGCAATACTCTTAAGGTAAATTCATATATGATAACGTTGAAAGCTATACAGCTTCATTTCCTCTGCTTGATTCTTCTGCCTCTTTTAAAGGTGCTGTTTGAGGAGCTGAGACTCGACCAAAAATGCAAGAAGAAGCTTGCAAGAACCACAATCAAGAATTATAAATCCACCTCAGAAGCTGTGTGTCGTGTGACTTGCTGTTGTATAGCAATTCTAATTCAAGGGAACTTATTTATAAGTAATCCTTTTACAATCTCGATCTGGGGTCTACATTATACAAGTAACCTTCAGGCCATCCCAAAACAAGTTATAGAAGTGTCTGGAATCAAGAAACAGCTCATCGTAGACTTTCAGTCAATTGAACTTCGCTTACTGTCACACCTGTCTGAGGACCCGTCGCTGATGCAGATCTTCAACGACAAACAATGTGCAGACGTATTTACAACACTTGCCTCACAGTGGTTGGGCAAAAGCTGTGAGCAAGTTCAGTTTCATGAGAGAGAAAGGACTAAGCGAATTGTGTATTCTGTTATCTACGGAGTTGGAAGCGAAAAACTTGGGCATACCCTCAAAGTGAGTACTGATGAAGCAAAAGGATTCATGGAGAGCTTTTTAGGTTACGTGTCCACCATTTTGAACAGAAGGCGATGGCTGCCACATATCAAGTCTTATGATTTCAACCAAAGATCGCAGGCTGAACGACAGGCTGTCAATTTTGTTGTGCAGGGTTCTGCCGCCGATATATGTAAAGCAGCGATGATTCAGGTGATAAGTGCCATAAGCGAGGACTCTTCTTTGCACGCTAGACTGCTGTTACAAATACATGATGAACTTCTTTTAGAGACCCCTGAGGATGAAATTAAGAAAGTGACAAGTAGAGACCAGATGTCTCCAAGGCCTCCTGGATACGATACCTTTACGAAGAACTTCAAAGAGAGATCATCTTTGCAGGCAGGAGACATTGTTGAAGGAGATATTATGCTGGATAGCAAAACTGCCGCTCTGTACCGAGGAGAGTCGAGAAATGCCATGAAGAACGTGAATCTGTGGAAAAATGGAGTTGTGCCTTACATTCTGGATGCAAGCGTGGATGATTACTTACGAAGCCAGATTGACGAGGGTATCAAGGAATACCACAAATATACCTGTCTTCGGTTTGTTAAGAGAACAAACGAAAAAGATTATATCAGGGTTATGAAGCCAGCCTCAGGCTGTAACTCAATGGTGGGCGCCATTAGAGGAGAACAAATCCTTAACATGGGACCTGGCTGTCAGTATGTAGGGCTCGTTCTCCACGAGTTCGGTCACGCAATCGGCTACTTCCACGAACACAACAGACCTGACCGTGACGATGCGGTCAACATCATGTGGGATAACATTCAGTATGGTTTCAAGGATGCTTTCTACAAGTACACTTTTGACCAGGCTGATGTACAGGGCTTCAAGTATGATCTGACCTCCATCATGCACTACGAGAACACCGCATTCACCAATGGTTATTGTCGTCCAACTATGCTTGTTAAGAAGGATCCCTCGTACGAAGTTACACCTGTTTACCTGAGGAAATTCAGCCCCCAGGATATTCAGAAAATAAACAAGCTTTACAGCTGCCAGACTGGTCAGCTACCGCCTACAGAATGTGTCTGTCAGGATAAATACAACGACTGTCCAGGATGGAGGGACTCGGGCGAGTGTGGCCTCAATCTGATGTGGATGAGCACCAACTGTCCAAAGAGCTGTAGAACATGTGGTGCAACTCAACCACCCCTCCCTGGAACTACTGCGGCACCTACTCCCCCTCCCCCTGGCACAACTCAAGGACCTCAGCCTCCCCAGCCCACCACTCAGGCACCTGGAAATTGCAATGACGTTTATCCTCAGTATTGTCCTGACTATAAGAAACGAGGAATGTGTCAAACACATGTGAATTACGTGAAGCAAGTCTGCAAGAAAACCTGCGGATTTTGTGGCGGAGGTGGCTCAGGAAATTGTAAAGATGTCTACCCTCAATACTGCCCAGGGTACAAGCAGAATGGCCTGTGTACTGATCCTAACTACTTGGACTATGTTAAGGAGGTCTGCAAGTTCACCTCGATCGTTCAGATTGGCCCCTGA

Transcript

ENSSYXT00000029666

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q7TQ07	DNA polymerase nu OS=Mus musculus OX=10090 GN=Poln PE=2 SV=2
P55115	Zinc metalloproteinase nas-15 OS=Caenorhabditis elegans OX=6239 GN=nas-15 PE=2 SV=2
P55112	Zinc metalloproteinase nas-4 OS=Caenorhabditis elegans OX=6239 GN=nas-4 PE=2 SV=4

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007951 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01549 all species →	ShK	ShK domain-like	Domain	Interproscan
PF01400 all species →	Astacin	Astacin (Peptidase family M12A)	Domain	Interproscan
PF00476 all species →	DNA_pol_A	DNA polymerase family A	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001506 all species →	Domain	Peptidase M12A	Interproscan
IPR003582 all species →	Domain	ShKT domain	Interproscan
IPR036397 all species →	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR024079 all species →	Homologous_superfamily	Metallopeptidase, catalytic domain superfamily	Interproscan
IPR002298 all species →	Family	DNA polymerase A	Interproscan
IPR001098 all species →	Domain	DNA-directed DNA polymerase, family A, palm domain	Interproscan
IPR006026 all species →	Domain	Peptidase, metallopeptidase	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR034035 all species →	Domain	Astacin-like metallopeptidase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10133 all species →	DNA POLYMERASE I	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004222 all species →	Molecular Function	metalloendopeptidase activity	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0008237 all species →	Molecular Function	metallopeptidase activity	Interproscan
GO:0003887 all species →	Molecular Function	DNA-directed DNA polymerase activity	Interproscan
GO:0006261 all species →	Biological Process	DNA-templated DNA replication	Interproscan
GO:0006302 all species →	Biological Process	double-strand break repair	Interproscan
GO:0097681 all species →	Biological Process	double-strand break repair via alternative nonhomologous end joining	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0006260 all species →	Biological Process	DNA replication	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSSYXP00000028183.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.