Gene detail

Detailed information of ENSSYXP00000028773.1 in Micromussa lordhowensis

Genomic Location: not available for this species
NR annotation: CAH3117253.1, unnamed protein product [Porites lobata]
Species Micromussa lordhowensis · all data for this species · gene families

Sequence

CDS

Transcript

ENSSYXT00000030296

aaaACTGAATCGCAGAAGAAAAGTCGTCTGGATTGGCGAAAAGAGAAGGAGCTAGAGGAAGCGAGAAAAGCTGGTACAGCACCAGCATTGACTGATGAAGAAGGAAAGCCCCTGCTGCTACTAAGTTCAGGAAAGGAGCATGCGAAAACTGTGGAGCAATGACTCACAAGaagaaacactgtcttgagAGACCCAGAAGAGTTGGTGCCAAGTTCACTGGCGATGATATCAAAGCTGATGAACAATTACAGCCACAACTTTCATTTGATTATGATGGCAAAAGAGACAGGTGGAATGGTTACAATGTCAACGACTACAAGAAAGTTGTGGAAGAATATACCAAGTTAGAAATGGCCAAACAACATTTAAAAGCAGAAAGATTGGAGGAGGAATTAGCAGAAGGAAAAAAGGCTGAAGTCGTGGATGAGCCTGACAGTGAGGATGAAGATAAGTATGCAGATAGAGCTGATATGCCGGGACAAAAGTTTGATACCAAAAGGCGAACAACAGTGAGGAACTTGAGAATTCGGGAAGACACAGCTAAGtatttGCATAACCTGGACCCCAATTCAGCGTACTACGATCCAAAGACAAGATCAATGAGAGAGAACCCTTTCAAAGAAAGAGATGGAATTCAAAACAATGTTACCTATGAGGGAGATAACTTTGTTCGTTTCTCTGGCGACACACAGAAGATGGCTCAAACACAAAtGTTTGCATGGGAGGCATACGAGAAAGGAGCTGATGTCCATCTTCAGGCAGATCCCACCAAACTCGAACTTTTACACAAAGAATACCGAGTGAAGAAAGGTGACTTTGAGCAAGACAAGAAACTCTCAATTCTTGACAAGTATGGAGGTGAAGAACATTTGAATGCCCCATCCAAAGACTTGTTGCTGGCTCAGACTGAACATTATGTTGAATACTCAAGGACTGGAAGAGTTATTAAAGGTCAGGACAAAGCTGTTGTAAAATCCAAATATGAGGAAGACATGTACACAAACAATCATACGAGTGTGTGGGGATCATACTGGCAGGAAGGAAGTTGGGGCTATGCCTGTTGCCATTCCTTCGTGAAAAACTCCTACTGTACGGGAGAAGCCGGGAAAGCAACTCCTTCTTCAAGGAACATTCCACCTCTTACAAATGCAGCAAAGATGATCCAAGAagcagaagaaaatggaaagtCTTTACTTGAGCTTCATCAGGAAAATCGTAAGAAAGGCAAGAAAAGGGAAAAGTCAGttgatgaagaagatgaagaagtcaAAAGGGAGAAACTCAACAAGGCATTAAGAAAAGAGGAGCGTAATCAACAAGAAGCGGACAAATTACTTTCCATGGATGAACGAAAACGACCGTACAACTCCCATAAAGGTGACTATCGTGAGGTAACCGACGAAGAGATGGAGGCCTATCGCATGAAAAGACGCCAGGAGGATGATCCAATGAAAGACTTCCTTTAGTCTTGTGTCATGTGAACAGCAATGAATGAGATTAACATGGAAGACGGAAATCTGACCATTGGCATTAACCAAGTAAATTATTGTTTGTCTTGTGATATTGCTCTAATGGTGGACAGTATCTAAAGAATGCCGAGCATGAAAGACCAACAtgtagtgtaaatccttcatCTTAAAGGTTTCTGCAAACTGACTCAGAGCAATATCTTATATCTGCACAGAAATGAACAGGAAAACTTGATTTCTTCTAAAGACATTTTACTCCAGACTTTTCTCTGTTGAGACATCATGCAAAGACAATTTTCCAAATGTGTGGATTTAAAATGTGCTAAAACACTATGGCAGTAAAACATGGCTGTCAAAAGCCCATGAttattttcaattattttccAGGACTAACGAGTGAACGGTTTCTTGCATGTATATagttttcaagcaaaaatatcattaatattttgCTTACATGTAGATTTGCCAACTGAGAGATGAAAAGTCAgtaaaagaaaattgagaagAATATCTTGTCTTGATTAATGGTTCAAATGAAAGAAATTCATTCAGTGTGACTGTCTCTTGAAGTGGGATTGTGTCCTGGGgcttttgtttagctgttgtaTATTATTTATTGTTGGGTCTTTTGTATCAGTTCTTGTTTACTGGTACACAAGGACAGAACCCTAAGTGGAGTTTTCTAAAGAACAAACTGACAATAAAACATCAGAATCCAACCAAATTTAACTTTATTCAACCTGTAATTAAACGTTCTTCAATATCTGTGAAATGCAAGCTACAAGGAACACTATTTTGTTCATTATTTCAAAGTTTG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8BHJ9	Pre-mRNA-splicing factor SLU7 OS=Mus musculus OX=10090 GN=Slu7 PE=1 SV=1
Q3ZBE5	Pre-mRNA-splicing factor SLU7 OS=Bos taurus OX=9913 GN=SLU7 PE=2 SV=2
Q80ZG5	Pre-mRNA-splicing factor SLU7 OS=Rattus norvegicus OX=10116 GN=Slu7 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003394 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF11708 all species →	Slu7	Pre-mRNA splicing Prp18-interacting factor	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR039974 all species →	Family	Pre-mRNA-splicing factor SLU7	Interproscan
IPR021715 all species →	Domain	Pre-mRNA-splicing factor SLU7 domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12942 all species →	STEP II SPLICING FACTOR SLU7	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000398 all species →	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0005681 all species →	Cellular Component	spliceosomal complex	Interproscan
GO:0008380 all species →	Biological Process	RNA splicing	Interproscan
GO:0030628 all species →	Molecular Function	pre-mRNA 3'-splice site binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12819	SLU7; pre-mRNA-processing factor SLU7	-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.