Gene detail

Detailed information of ENSSYXP00000029955.1 in Micromussa lordhowensis

Genomic Location: chr8:32535546...32560562
NR annotation: KAJ7383993.1, hypothetical protein OS493_024686 [Desmophyllum pertusum]
Species Micromussa lordhowensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ENSSYXT00000031528

ATGTTCGGAATTCTGAATGACTTTCAACCTTCAAGTCTGGCTGAGGAGGAATTCTTCACGGATCTGTCATTGCTGATGACCATGTCCGCTCATCATCCAGCATTCTCCTTTCATCAGAAACATACTTTACGCGCAAAATTAAAACAGCTTAAGCAGTCAGCAAATCACACATCAGATCTAAGCGAGACTGTTTCCGAATCAAGCAGTGGTTCTTCGACGTTTTCTCTGGATCACGATGTCCCAGCGAAGCTCGAGACACAGGATGACCTTttacatcaacaacaacaaaccaaGGAATCTCTTGAAGAAAAAGCAACTATGAAAGAGGTTAAAAAGGTGGAGCTCATGCTGGATATCCCCCCTGTCAAGGATAAAACTCCTGATCCTCAAGTTTATGTCAAAGAGATTAAAGTGCAGGGAATAGAGAAGATCAAGGAGAAGAAATCAAGACATGAGCTAAGAAAACGTGATGATCATCGGTATGTTCTACAGGTTTCTTGGTGTGATAATACCACAGAAACAATTCACAGAACGTATGAAGAGATGTTTGACTTTCAGtgcaagTTGCGGAAAATGTACCCAAACAAAGTTGATGCAAGTGGTAATCCTTGGAAACTTCCTTTCTTACCTGGTAGAATCAGGATTTTTAACAAACCTGAACAGAAAGGAGAAAAGACACCCATCCCTGATATTTCTGATTACACCAGGTTGTTCAGCAGTCTTCCTAAGTTTGTTCGTGGCTGTGATCATGTTGTGAAGTTTTTTCAAAGTGATAAGAGAACCAGAAAGAAGTCAGACAGTAAGAAGGCTAAAGGTTCAACAAAAAAGGAAGAACAATCTGAAAAAGTCAAGCAAAAGGAATTTGAAACACCTCATAAGATAGCTGAAGCTGTCCGTGAACAATCGCTTGGAGGAAAGGATAACATGAAAAGTTTGGATGTTACCAATGCTAAAAAGCAGTCTCCAAATAATGTGTCTGAAGAGGAGGAACCAGTGACTGGTCTTGATGAAAATGGCAATGAGGTCAAGGTTTTGCCACCTGAAAACTCAAAGGAAAAGGAGGGGAGCAAAGAATCTCTCTTAAATGAAAAACAGGGCAAAAATGGATTTATTAAGATTTCACCATCAAAAACTTTATTGCCATCATCGTtggtatcatcatcatcatcatcatcttcatcatcagGTGCTCTGCTCACTACATCCCAAAGCTCTCTTACATATAAACCTTTATTTCCCACAGCAATGCCAAGTAACATGTTACACATGCTTACTTCTAATGGCTTGCATTCTTCTCTTCAAACATCTCTTACATCACTGCAGCTAACCATGCCCTCATCGCCTATCACATCATACCCATCACCTTCTCCATCTTCAAATGGATCACCTGTTACGTCTCCTGCAAGCTCTCCATCGTGTTCACGACAGCGATCTTGTTCTGGGAATATTAACTGGACATCTAGACCCCGTAGTCATGCTATGACTGTTTCTGAATGGCTCAGAAACCTTAGACTGCACAAATATTCTGAAGTGTTCAAAGGAAAGACTTTTGATGAGaTGTTGAAGCTTTCAGATAAAGACTTGGAAAAACTTGGTTTGACAACGGGGGCTAGAAAGAAACTTCAAGTCAACCTGGAAGTTCTACGGACAAGTGGCTGCTTCACCTCCAATGGTTTAACAATAGTGGACATTCTTACATCTCCACCATCAGACCTAACTCCATTGCAGACCCCTACTCACTCTAAAGGCATTTTGATACCATCTAGTTTTCCTGTCCATCCACCACTAAGTTACAACTCAGACAGTGAATTTCTGCGTAGTGTCAGTGAAAGTGACAGCGCTAGTGACTGTGGCAGTGATGTGCTGTCTGAGCCAGGCACTCAGACAGGTTGTTCCAATATTTATCCAagaaaatttgcagttttgaaTGGTTGCCGTCTGTCTTGTTACAACTGTGGCAGTCTTGGACATGTTGGTCAGCAATGTATGGCTCCAAATCTAGACAAAAAGCCGTCAAGTTATGGTTCTCATTTTCGATATGATGGACAGCTAGAATGTTGA

Transcript

ENSSYXT00000031528

AATAATCCAACGGATTTGAGTTGTTTGTCGTGTTTGCATGATGTTCATGTCCGACGGAAGCTGTGTGTTTCACTGGCTTTACTTCACTCCAGCAATCGCCAAGCCGCTGCCATAATGTTCGGAATTCTGAATGACTTTCAACCTTCAAGTCTGGCTGAGGAGGAATTCTTCACGGATCTGTCATTGCTGATGACCATGTCCGCTCATCATCCAGCATTCTCCTTTCATCAGAAACATACTTTACGCGCAAAATTAAAACAGCTTAAGCAGTCAGCAAATCACACATCAGATCTAAGCGAGACTGTTTCCGAATCAAGCAGTGGTTCTTCGACGTTTTCTCTGGATCACGATGTCCCAGCGAAGCTCGAGACACAGGATGACCTTttacatcaacaacaacaaaccaaGGAATCTCTTGAAGAAAAAGCAACTATGAAAGAGGTTAAAAAGGTGGAGCTCATGCTGGATATCCCCCCTGTCAAGGATAAAACTCCTGATCCTCAAGTTTATGTCAAAGAGATTAAAGTGCAGGGAATAGAGAAGATCAAGGAGAAGAAATCAAGACATGAGCTAAGAAAACGTGATGATCATCGGTATGTTCTACAGGTTTCTTGGTGTGATAATACCACAGAAACAATTCACAGAACGTATGAAGAGATGTTTGACTTTCAGtgcaagTTGCGGAAAATGTACCCAAACAAAGTTGATGCAAGTGGTAATCCTTGGAAACTTCCTTTCTTACCTGGTAGAATCAGGATTTTTAACAAACCTGAACAGAAAGGAGAAAAGACACCCATCCCTGATATTTCTGATTACACCAGGTTGTTCAGCAGTCTTCCTAAGTTTGTTCGTGGCTGTGATCATGTTGTGAAGTTTTTTCAAAGTGATAAGAGAACCAGAAAGAAGTCAGACAGTAAGAAGGCTAAAGGTTCAACAAAAAAGGAAGAACAATCTGAAAAAGTCAAGCAAAAGGAATTTGAAACACCTCATAAGATAGCTGAAGCTGTCCGTGAACAATCGCTTGGAGGAAAGGATAACATGAAAAGTTTGGATGTTACCAATGCTAAAAAGCAGTCTCCAAATAATGTGTCTGAAGAGGAGGAACCAGTGACTGGTCTTGATGAAAATGGCAATGAGGTCAAGGTTTTGCCACCTGAAAACTCAAAGGAAAAGGAGGGGAGCAAAGAATCTCTCTTAAATGAAAAACAGGGCAAAAATGGATTTATTAAGATTTCACCATCAAAAACTTTATTGCCATCATCGTtggtatcatcatcatcatcatcatcttcatcatcagGTGCTCTGCTCACTACATCCCAAAGCTCTCTTACATATAAACCTTTATTTCCCACAGCAATGCCAAGTAACATGTTACACATGCTTACTTCTAATGGCTTGCATTCTTCTCTTCAAACATCTCTTACATCACTGCAGCTAACCATGCCCTCATCGCCTATCACATCATACCCATCACCTTCTCCATCTTCAAATGGATCACCTGTTACGTCTCCTGCAAGCTCTCCATCGTGTTCACGACAGCGATCTTGTTCTGGGAATATTAACTGGACATCTAGACCCCGTAGTCATGCTATGACTGTTTCTGAATGGCTCAGAAACCTTAGACTGCACAAATATTCTGAAGTGTTCAAAGGAAAGACTTTTGATGAGaTGTTGAAGCTTTCAGATAAAGACTTGGAAAAACTTGGTTTGACAACGGGGGCTAGAAAGAAACTTCAAGTCAACCTGGAAGTTCTACGGACAAGTGGCTGCTTCACCTCCAATGGTTTAACAATAGTGGACATTCTTACATCTCCACCATCAGACCTAACTCCATTGCAGACCCCTACTCACTCTAAAGGCATTTTGATACCATCTAGTTTTCCTGTCCATCCACCACTAAGTTACAACTCAGACAGTGAATTTCTGCGTAGTGTCAGTGAAAGTGACAGCGCTAGTGACTGTGGCAGTGATGTGCTGTCTGAGCCAGGCACTCAGACAGGTTGTTCCAATATTTATCCAagaaaatttgcagttttgaaTGGTTGCCGTCTGTCTTGTTACAACTGTGGCAGTCTTGGACATGTTGGTCAGCAATGTATGGCTCCAAATCTAGACAAAAAGCCGTCAAGTTATGGTTCTCATTTTCGATATGATGGACAGCTAGAATGTTGATGAGCACTTACACAAACATAAAAGCTGAGAGCAAACATTTGGAAGATTGTAATTAGCGAAGCCTGAGCATCACCAAACAAGGACACTAGAGTGCATAGTTCATGGTCTGGACATGCTGGAACTCTCACTGCCTTCCTCAACATCCTGAAGAGAGGGGACACTATTCTACAAAGTTCTACACAGGGAGGCTTTACCCCAACGGCCAACCCCTTATtcttttgtataccattttgacagaaaagttACCCCTTTTGTACACctttaattgaaaaaaaggTAACCCTTTCACATACAGGTTGTAGCCAGCAGCCAGCTGCAACCTGTTTGGTGTGGCAAAATTATTGTTGACATGATCAAGCTTGTGTAAGTAGGTTCTTTGCATGACTGTGTCACATGACCTTGTCAATCATACAAAGTGATCATGGTACAAAATagatgccagaaatggaaagagcagtGTAATTAGACTGCCAAATTTGAAGCCACTGATGTTTAAGTTAGAGATTTAATGGCGATTTTAATGTAAAAACAATCAgcaagatttgtatggaaaagaGCTGCTGGATGGCAAAGTTTGCCATCCACCATACAAATCTCTTAATATAAGCATAAGGATAAGCCGACATACATAGACTCAGTAAAATGTTAATTATTAGCGTCTTTTGTTAggaattttcctaacaaaaggtgTTAGGCCGACATACACAGACTCAGTAAGGTGTTGATTATTTGCATCTTTTGTTAggaattttcctaacaaaacgtaattatcaacatcttactgagTCTGTATATGTTGGCTTATGCTTAttcactagtgaaaaccagcctttagaatTTTCAAACTATCAAACTGCTCTAAATTCGAGCACCAGAATTGGCAACATTACTAATTTCATCACACTCTTTCTATTTCTATCTATTTTGTACCACAACTATTTTCTATGATTGACAAGGTCATG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
B3NFQ7	Protein Smaug OS=Drosophila erecta OX=7220 GN=smg PE=3 SV=1
B4HKJ7	Protein Smaug OS=Drosophila sechellia OX=7238 GN=smg PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005794 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00098 all species →	zf-CCHC	Zinc knuckle	Domain	Interproscan
PF00787 all species →	PX	PX domain	Domain	Interproscan
PF00536 all species →	SAM_1	SAM domain (Sterile alpha motif)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR042344 all species →	Family	Zinc finger CCHC domain-containing protein 14	Interproscan
IPR013761 all species →	Homologous_superfamily	Sterile alpha motif/pointed domain superfamily	Interproscan
IPR001683 all species →	Domain	Phox homology	Interproscan
IPR001878 all species →	Domain	Zinc finger, CCHC-type	Interproscan
IPR036871 all species →	Homologous_superfamily	PX domain superfamily	Interproscan
IPR001660 all species →	Domain	Sterile alpha motif domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16195 all species →	ZINC FINGER CCHC DOMAIN CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0035091 all species →	Molecular Function	phosphatidylinositol binding	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSSYXP00000029955.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Micromussa lordhowensis tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Micromussa lordhowensis, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →