Gene detail

Detailed information of ENSSYXP00000030173.1 in Micromussa lordhowensis

Genomic Location: not available for this species
NR annotation: KAJ7383604.1, Ubiquitin carboxyl-terminal hydrolase 47 [Desmophyllum pertusum]
Species abbreviation MLORD · all data for this species · gene families

Sequence

CDS

ENSSYXT00000031752

ATGAAGCGGTTTGCGTTTGACTATGCAACGCTACACAGAGTGAAACTTAATGACAGGATGACTTTCCCAAACTATCTCAACTTGAAAGACTTCATCAGTGAAGAACCGGAAGAGAATGGTGCAGATGAAGATGCCAGTCTGAAAGGGGATTCCCCCAGCAGCACAGAGACTGACAGTGGTGTAAGTGAAGGCTGCTCTGATAACGGCATGTCCACTGAAGAGGAAGAGATGGACAATGCAGTTGGAGGCGTCAATAGTGTGGACCGAATCACTGGAATGAAGGAAGTGGAGCTAACTGAAGACTTGTTCAGCAATGGCCTGCCACAGAACATGAAGGGTCCATATTGTTACGAGTTGTTCTCAATAATGATTCACTCTGGCAGTGCATCTGGTGGCCACTATTATGCTTACATCAAATCCTTTACAAATGGTCAGTGGTATTGCTTTAATGACCAGAGTGTAACCAGGGTATATAATGAGGATATTGAGCGTACCTTTGGAGGACTTGAGTCTTCAAGAAGCTACTACTCATCAGTATACTCAAGCTCCACAAATGCATACATGTTGATGTACAGACAAGTCAATTCAGAGAGAAATGCAAAATTCTTAGATCAATGTGACATGCCCAGACACATAATGGAACTAATGTACAAGCTGAGACAGCAGGAGGAgatggaaagaagaagaaaagaaatggaCAGGTGCATGTGTAAGATCAAGATTTTTTGTGAGCATCCCATCACCAAACGATGGATGGAGCGAAAATTGGAAATTCACAAGGATGAAACTTTGAAAGATGCCGTAGCCATTGCTCATAAGCTCTTCCACTTAGAGAAGGTTGTAACTCCAGAACAGTGCAGAATTGTCAAGTATGATGAGTATTATGACTACATTGAGAGATCATATGATGGTGAAGAGAATGATCCAATGGGAAAAGTACTTTGTCACGTTAAACAGTCTTATATGTTCGACCTTCTTCTTGAAACAAGAATGGCACATGAAAGTTTTTTCCCTTACAAACCTGGAGGAACAACAGTAAAAGTTCATTTGGTAGATCTTGAAAATGAGAGGGTCGCTCCATATGTAAATGTACGACCATTACTCAGTTCAACTGTAAGAGATCTAAAAAATCTAATTCATGAGAAATTTAGCCTTCCTTCTTTGGTTTCTATGAGAGTTGTGTTTGATGGAGCATATGGTGATCTTAAGCTGCTGGACAGCCCCAACAAAGTGTTAAAAGAACTTGGattcttcaaaaacaacaggGTTTTTGTGGAAGCCTCAAACAAGGAGGAAGATCTATTATTTAAGGACTCAAGACTGTTCAAAGTGTTGGATGTGTATCAGCACACCATTCAACTGTTTGTCATGTTACCAGATCCATCCAGAAAGCCCTCAGAGCACACAAGTAGGTATATCTGCGAGGCTGCAGTTGATTCTGAAAAGAATGAAAACCAAAGAGaaaaaaatgttcatGTAGACAAGAGAATCACCCTTGGTAAGCTGAAGGAAATTCTCAAGAGTGACGTAGGATGTTCACCTGAATTTTTTAGAGTTTACCGAGTGTATGGAAACAACCAAGAAATTGAGTACAGCAAATTATCTGACCCTTTAACAAGTTTCAATGATGACTCCAAGGTGCGAGTGAAGTACAGCCGTGCTCTCAAGAAAGGGGAACATcaactgaaaatattcttgttgaATCGCACTGAAAAGGAGCCGTTCAAGTACTTTTGTGACTGGATTGTGACTGATGGTATGACAGTGAAGCAATGCAAAGAGCTTCTGCAACCAGAAATCTGTCAAAGATGTGGTATTGACATACCAGTGGAAAATCTGAGAATGCGAAGAAAAAACTGGAAAAATCCTGGAACAGTCTATGTTGACAGTCAGGTGTTTGAAGAGAACATTCAAGTGTATGCAAACTTTGAAGTGTTTCTGGAAATACTGGAAGGCCCTGAGAGAATGACCTCAACAGAACAGCTATCAGTCTATGTACGGCAATGGCACCCTTCAACTTTAACTCTTGACCTTCCACAAGAGGTTGTTTTGAAGGATGGTGTGGTTGAAGAATTGAAACAAGAAATAAGTAAACTTAGTAGCATTCCAGTTGAAAATTTAGAGTTATGCAAGGGCCGTGGACAGTTTCCCTGTGAAGTCCCAATTCTGGAAATTCATGATGAATATGACTGGTCAAGTGATATGACATCCCTTGGAGCAAGTCCTTTGCTAATTAATGATGATGGAGCAGTGTTATTCTATAGAGATAAAACAGAGGACCTCATGGAAATAACAGAAGAGATGAAACAAGAAatcttgaaaaaagaaaatgccaAAAACAGCAGTTCAAGCACAAGAGTTGGCAGGTTTTCATACAAAGAAAgagcactgaaaatatataCGGATGACAACAGACCAAACAACTGA

Transcript

ENSSYXT00000031752

GGATTGAAATTCATCTCCTTCCCTTACCTTTTAACATTACAAATGAAGCGGTTTGCGTTTGACTATGCAACGCTACACAGAGTGAAACTTAATGACAGGATGACTTTCCCAAACTATCTCAACTTGAAAGACTTCATCAGTGAAGAACCGGAAGAGAATGGTGCAGATGAAGATGCCAGTCTGAAAGGGGATTCCCCCAGCAGCACAGAGACTGACAGTGGTGTAAGTGAAGGCTGCTCTGATAACGGCATGTCCACTGAAGAGGAAGAGATGGACAATGCAGTTGGAGGCGTCAATAGTGTGGACCGAATCACTGGAATGAAGGAAGTGGAGCTAACTGAAGACTTGTTCAGCAATGGCCTGCCACAGAACATGAAGGGTCCATATTGTTACGAGTTGTTCTCAATAATGATTCACTCTGGCAGTGCATCTGGTGGCCACTATTATGCTTACATCAAATCCTTTACAAATGGTCAGTGGTATTGCTTTAATGACCAGAGTGTAACCAGGGTATATAATGAGGATATTGAGCGTACCTTTGGAGGACTTGAGTCTTCAAGAAGCTACTACTCATCAGTATACTCAAGCTCCACAAATGCATACATGTTGATGTACAGACAAGTCAATTCAGAGAGAAATGCAAAATTCTTAGATCAATGTGACATGCCCAGACACATAATGGAACTAATGTACAAGCTGAGACAGCAGGAGGAgatggaaagaagaagaaaagaaatggaCAGGTGCATGTGTAAGATCAAGATTTTTTGTGAGCATCCCATCACCAAACGATGGATGGAGCGAAAATTGGAAATTCACAAGGATGAAACTTTGAAAGATGCCGTAGCCATTGCTCATAAGCTCTTCCACTTAGAGAAGGTTGTAACTCCAGAACAGTGCAGAATTGTCAAGTATGATGAGTATTATGACTACATTGAGAGATCATATGATGGTGAAGAGAATGATCCAATGGGAAAAGTACTTTGTCACGTTAAACAGTCTTATATGTTCGACCTTCTTCTTGAAACAAGAATGGCACATGAAAGTTTTTTCCCTTACAAACCTGGAGGAACAACAGTAAAAGTTCATTTGGTAGATCTTGAAAATGAGAGGGTCGCTCCATATGTAAATGTACGACCATTACTCAGTTCAACTGTAAGAGATCTAAAAAATCTAATTCATGAGAAATTTAGCCTTCCTTCTTTGGTTTCTATGAGAGTTGTGTTTGATGGAGCATATGGTGATCTTAAGCTGCTGGACAGCCCCAACAAAGTGTTAAAAGAACTTGGattcttcaaaaacaacaggGTTTTTGTGGAAGCCTCAAACAAGGAGGAAGATCTATTATTTAAGGACTCAAGACTGTTCAAAGTGTTGGATGTGTATCAGCACACCATTCAACTGTTTGTCATGTTACCAGATCCATCCAGAAAGCCCTCAGAGCACACAAGTAGGTATATCTGCGAGGCTGCAGTTGATTCTGAAAAGAATGAAAACCAAAGAGaaaaaaatgttcatGTAGACAAGAGAATCACCCTTGGTAAGCTGAAGGAAATTCTCAAGAGTGACGTAGGATGTTCACCTGAATTTTTTAGAGTTTACCGAGTGTATGGAAACAACCAAGAAATTGAGTACAGCAAATTATCTGACCCTTTAACAAGTTTCAATGATGACTCCAAGGTGCGAGTGAAGTACAGCCGTGCTCTCAAGAAAGGGGAACATcaactgaaaatattcttgttgaATCGCACTGAAAAGGAGCCGTTCAAGTACTTTTGTGACTGGATTGTGACTGATGGTATGACAGTGAAGCAATGCAAAGAGCTTCTGCAACCAGAAATCTGTCAAAGATGTGGTATTGACATACCAGTGGAAAATCTGAGAATGCGAAGAAAAAACTGGAAAAATCCTGGAACAGTCTATGTTGACAGTCAGGTGTTTGAAGAGAACATTCAAGTGTATGCAAACTTTGAAGTGTTTCTGGAAATACTGGAAGGCCCTGAGAGAATGACCTCAACAGAACAGCTATCAGTCTATGTACGGCAATGGCACCCTTCAACTTTAACTCTTGACCTTCCACAAGAGGTTGTTTTGAAGGATGGTGTGGTTGAAGAATTGAAACAAGAAATAAGTAAACTTAGTAGCATTCCAGTTGAAAATTTAGAGTTATGCAAGGGCCGTGGACAGTTTCCCTGTGAAGTCCCAATTCTGGAAATTCATGATGAATATGACTGGTCAAGTGATATGACATCCCTTGGAGCAAGTCCTTTGCTAATTAATGATGATGGAGCAGTGTTATTCTATAGAGATAAAACAGAGGACCTCATGGAAATAACAGAAGAGATGAAACAAGAAatcttgaaaaaagaaaatgccaAAAACAGCAGTTCAAGCACAAGAGTTGGCAGGTTTTCATACAAAGAAAgagcactgaaaatatataCGGATGACAACAGACCAAACAACTGAAAACGGCAAGATTCAGTTTACGAATAAATCATCAGGAAGCATGGTTAAAACAGCTCTGAAAATTATGTACAAAAATATATCACGATGAGAACAAACCAAACATTGGAATCAAACAATAGACTCGTGGTCAAAACAGCTCTcagaatcaaaactttgacCCACTCCATGAATTCCCAGAACATGTTGCAACTTCCACCAATTTTGTGCAATGTAATTTCATAGAAGATTGCAAATCGGACAAGACTACATTGATATTTCTTGAGAATAGTCGACTGGAAGTGCATCAGGAGGTTTACTTGAAAAAGAACAGCAAGTCTGAAAGGATCCTTCAAATGTTGCACTGAAAAAAGCCTATCAACCCAAGAATGTTTCCAGGACCATTGACTTCTTTAGATCCAATTTGtctttgcatttttataattcAATTTTGATATTCATAGTCATTAAACGTGAGCCCCCTCCCTGTTAAATCGCTGATGCGGATTTTAAAATATCTTGCGGACACTGATTGAAACAGTTTTCCACATGTAGTCCAAGAGGAAGACCAGGAACAAAATATGTCAGAAATTTAAGATGACTGCATGATTTATAACAGTAAATGTAGAATGACTAGGAACAGTGATGATCTCCTTGTACAGTGGAGAAGTTCAGCCTGGCATTTACGACAAACAGCAAACATAACCTcttattttgtctttgtttcttCTAATCTCTAAATAAATCACAGATTGAAATATAGAAAAATGTCTTCTACTATTCACCCCATTCATTTTTGCTGTTTGCTGTAAACATCatgtttaaagtggtactatgatcaaatttttaccccttgttttttttagtgtatcacaaagaattccatgaaagaatgaaaacgccgtttaccgtttgcaaatatctgcattagttccagagatatttaagtttgaaaaatgggtaaaatatgcaaatgagatggctgatgacgtcatacactcaacccaatattttattgagtat

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
E1C1R4	Ubiquitin carboxyl-terminal hydrolase 47 OS=Gallus gallus OX=9031 GN=USP47 PE=3 SV=1
Q96K76	Ubiquitin carboxyl-terminal hydrolase 47 OS=Homo sapiens OX=9606 GN=USP47 PE=1 SV=3
Q8BY87	Ubiquitin carboxyl-terminal hydrolase 47 OS=Mus musculus OX=10090 GN=Usp47 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003814 (this species only)
Ubiquitin family	ULD\|UFD/UBQ\|UBQ_Other · all ubiquitin genes in this species
Ubiquitin family	ULD\|UFD/UBQ\|UBQ_PIM · all ubiquitin genes in this species
Ubiquitin family	DUB\|USP\|USP · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF19718 all species →	USP47_C	Ubiquitin carboxyl-terminal hydrolase 47 C-terminal	Domain	Interproscan
PF00443 all species →	UCH	Ubiquitin carboxyl-terminal hydrolase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050164 all species →	Family	Ubiquitin carboxyl-terminal hydrolases	Interproscan
IPR018200 all species →	Conserved_site	Ubiquitin specific protease, conserved site	Interproscan
IPR045578 all species →	Domain	Ubiquitin carboxyl-terminal hydrolase 47, C-terminal	Interproscan
IPR038765 all species →	Homologous_superfamily	Papain-like cysteine peptidase superfamily	Interproscan
IPR001394 all species →	Domain	Peptidase C19, ubiquitin carboxyl-terminal hydrolase	Interproscan
IPR028889 all species →	Domain	Ubiquitin specific protease domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24006 all species →	UBIQUITIN CARBOXYL-TERMINAL HYDROLASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004843 all species →	Molecular Function	cysteine-type deubiquitinase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0016579 all species →	Biological Process	protein deubiquitination	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11857	USP47; ubiquitin carboxyl-terminal hydrolase 47	EC:3.4.19.12	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.