Gene detail

Detailed information of ENSSYXP00000031077.1 in Micromussa lordhowensis

Genomic Location: chr8:24051856...24060951
NR annotation: XP_020602188.1, follistatin-related protein 5-like [Orbicella faveolata]
Species Micromussa lordhowensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ENSSYXT00000032674

ATGATGAAGTTAACAACACTTCTAACATTGGGGATAACCTTTGCTATAGTTCTTGTACATTCCACGGTTTATGGAGGtgaaaaagaacgaaaaatcaatttaacaaagaaagaacGTTGCTGGCGGATTTGTCCTTCCGGTAGAGAATGCCAGACTCAGTCAGACGGCATTGAAGTGTGTGTCTGTGCGTCTCAATGTAAAAAGAGACACAAACCAGTATGCGGGACAGACGGACACTTGTATATCAACCACTGCGAGTTGCACAGGGTCGCTTGCATTACTGGCAAGAAAATCAGAGTCGACTGGGGTTTGAAGTGTctaaagaaacaagctaaatcaAAAGATTGTCCAGAAGAGAAATTATTCAAACTGAAGCAGTTGATATTAGCAACCTTTCAAAAGGAACTACGCAAGGAAGCGACGTCAAAAATCCTGATTGACGAGTTGTTCTTCCGGTATAACAGGGACGGCGATCACAGCATCAGCAGTTTTGAGCTCAAAAGCCTGGTCACTGATTACGTCATGTACGACAACATCAAAGAACTCGTAGACAAATGCCATCCGACACAGTGGTTAAACGCTGCTGATAAAGACTTCGATGGATTTCTTTCCAAAGACGAATTTTCACAGAGTCTTGCGAGCAAACCAGAAGTTAGCATCCTTGAAAATGACGAGCAGCCGATGTCTGGTTCCAATCTCACTCTCCGATGTCGAGTACGTGGTTACCCTGTTCCTACGATCAAGTGGTTGAAAGATGAAAAACCGCTGAACGCAAACGATCGCATTTCGACGAACTCGGACGGGGAACTTTTTATAAAGGGGCTCGGAGTGGTTGACAATGGGATGTACACATGCGAGGCCTCAAATGACTTGGGAGTGGACAAGAACCAAGTGGGGGTAAATGTCCAAGAACCAGTCACTGAAGCTCCAGCCGTACCAGGGGCTAACTTGTTTTACGCCTTTGCAAACGACGGTGTTTACGTCATCGATCCTGAAACGCCATCCACTGTCAATCACATCAgagctgatgacgtcataaacgGTACAAAGTCTCCCATTTGCACCAGTGGTCGACAGCAGGCGTGCAACTGGGGCGGAGCGGTAAGCGTCGGCGTCAAATTCATCTACGCGGCGGATTTTCTTGGGCGAAGAGTCCTAGTGCTGGATATTGCGACGCAGAAATTTGTTCAAGAAATAACTACAGACGACTATCCCTACCAGCTGAAATATGTCAGGTCCCTAGATGCCGTGTGGATTCTCTGTTGGGAGAATAGTACTCTGGATGTCCTCACTGAGGATGAGGACGATAACGGAACACTGTCAGTGATAAAAGACGCTAGTAAAGTGACTGTCCACACGTCAATCAAGGCACAAATAATTGACAGCTACCCACGGCCTGTGCATGGCTTCTTTGTGGCGGAGAATTGCGAGTTGACAGACCAGAAAACCAAGTATGGCTACGTCACTCATATTATGGAACCTGGCCTTCACGAGGTAGACTTGGTTACCAAACAGTACTCGAAGTTTTACAATCTCAGTGATTACCAGTGCTACGGAACATTTGACTTGGCTTTGTCCCAGCTGTACAGATATGCGTTCGTTCAATGCTACACTAACGAAGAACGAGATACCAGAGCACAAATAGTGATGGATTTAGAAAAAAGGCAAATGATGGCAGTGGATTCAAGGCAATTTGGCACACCATTTGCCTCCCCTGACGGACGTTTCATCATCACATTGAATTATTACGCTATTTTAACTCGGTACATCGATCCAGCGGGCCAGATTTACTTGTTCCAAGAAATGAAATCTAACTTGCTGCTCAGCGACCTCGCCTTCTACCCACGTGATGCAGGCTATGACGTACACGTGACGTCAAAGGACCAATCGTCAATAATATTGCTCCACGTTGATCAAAGAGGCATACATATCGTCAAGTTTATTTCCACAGTCGGTAAGCCCTCGTCGGTGAGGGACTGGGTCCACACTCAGCGACCTATCGTGACTGGCTGCGGGCCTAACGCTCGTTACCTAGCAACGCCCGCAACACGCGAGGACGCGGTTGTTGTTATAGATGGTGAGAAGCAGGAGATGCGAGGAATGGTGCAAGGAATTAAGGGGGCTCGCACAATTGTGTGGGTCGGCGGTAGTGAATAG

Transcript

ENSSYXT00000032674

ATCTTTTTTACATCCAGTTTGTTGTTTCAAGAGAGCATTCCTGTGCGCTCAGTCGACTTGTGGAAGGGTTGCGAGAGCTTAGCACGcgcaaacaaaccaaaaaaaaatcctgCGATATGATGAAGTTAACAACACTTCTAACATTGGGGATAACCTTTGCTATAGTTCTTGTACATTCCACGGTTTATGGAGGtgaaaaagaacgaaaaatcaatttaacaaagaaagaacGTTGCTGGCGGATTTGTCCTTCCGGTAGAGAATGCCAGACTCAGTCAGACGGCATTGAAGTGTGTGTCTGTGCGTCTCAATGTAAAAAGAGACACAAACCAGTATGCGGGACAGACGGACACTTGTATATCAACCACTGCGAGTTGCACAGGGTCGCTTGCATTACTGGCAAGAAAATCAGAGTCGACTGGGGTTTGAAGTGTctaaagaaacaagctaaatcaAAAGATTGTCCAGAAGAGAAATTATTCAAACTGAAGCAGTTGATATTAGCAACCTTTCAAAAGGAACTACGCAAGGAAGCGACGTCAAAAATCCTGATTGACGAGTTGTTCTTCCGGTATAACAGGGACGGCGATCACAGCATCAGCAGTTTTGAGCTCAAAAGCCTGGTCACTGATTACGTCATGTACGACAACATCAAAGAACTCGTAGACAAATGCCATCCGACACAGTGGTTAAACGCTGCTGATAAAGACTTCGATGGATTTCTTTCCAAAGACGAATTTTCACAGAGTCTTGCGAGCAAACCAGAAGTTAGCATCCTTGAAAATGACGAGCAGCCGATGTCTGGTTCCAATCTCACTCTCCGATGTCGAGTACGTGGTTACCCTGTTCCTACGATCAAGTGGTTGAAAGATGAAAAACCGCTGAACGCAAACGATCGCATTTCGACGAACTCGGACGGGGAACTTTTTATAAAGGGGCTCGGAGTGGTTGACAATGGGATGTACACATGCGAGGCCTCAAATGACTTGGGAGTGGACAAGAACCAAGTGGGGGTAAATGTCCAAGAACCAGTCACTGAAGCTCCAGCCGTACCAGGGGCTAACTTGTTTTACGCCTTTGCAAACGACGGTGTTTACGTCATCGATCCTGAAACGCCATCCACTGTCAATCACATCAgagctgatgacgtcataaacgGTACAAAGTCTCCCATTTGCACCAGTGGTCGACAGCAGGCGTGCAACTGGGGCGGAGCGGTAAGCGTCGGCGTCAAATTCATCTACGCGGCGGATTTTCTTGGGCGAAGAGTCCTAGTGCTGGATATTGCGACGCAGAAATTTGTTCAAGAAATAACTACAGACGACTATCCCTACCAGCTGAAATATGTCAGGTCCCTAGATGCCGTGTGGATTCTCTGTTGGGAGAATAGTACTCTGGATGTCCTCACTGAGGATGAGGACGATAACGGAACACTGTCAGTGATAAAAGACGCTAGTAAAGTGACTGTCCACACGTCAATCAAGGCACAAATAATTGACAGCTACCCACGGCCTGTGCATGGCTTCTTTGTGGCGGAGAATTGCGAGTTGACAGACCAGAAAACCAAGTATGGCTACGTCACTCATATTATGGAACCTGGCCTTCACGAGGTAGACTTGGTTACCAAACAGTACTCGAAGTTTTACAATCTCAGTGATTACCAGTGCTACGGAACATTTGACTTGGCTTTGTCCCAGCTGTACAGATATGCGTTCGTTCAATGCTACACTAACGAAGAACGAGATACCAGAGCACAAATAGTGATGGATTTAGAAAAAAGGCAAATGATGGCAGTGGATTCAAGGCAATTTGGCACACCATTTGCCTCCCCTGACGGACGTTTCATCATCACATTGAATTATTACGCTATTTTAACTCGGTACATCGATCCAGCGGGCCAGATTTACTTGTTCCAAGAAATGAAATCTAACTTGCTGCTCAGCGACCTCGCCTTCTACCCACGTGATGCAGGCTATGACGTACACGTGACGTCAAAGGACCAATCGTCAATAATATTGCTCCACGTTGATCAAAGAGGCATACATATCGTCAAGTTTATTTCCACAGTCGGTAAGCCCTCGTCGGTGAGGGACTGGGTCCACACTCAGCGACCTATCGTGACTGGCTGCGGGCCTAACGCTCGTTACCTAGCAACGCCCGCAACACGCGAGGACGCGGTTGTTGTTATAGATGGTGAGAAGCAGGAGATGCGAGGAATGGTGCAAGGAATTAAGGGGGCTCGCACAATTGTGTGGGTCGGCGGTAGTGAATAGAAATAAAACGCATTTCCTAACCAATGACGGAAAGCAAAAATGTACTTGTCGCGAGACAAGTTAGCAAAAGGACAGCAAAACGTCTTTAGAAACAAACGCATTGTTAGAATGAATGCTGTGGTTATTCAAATGATCTTTTATAATACAGTTCTACGTAAGTAATAACATTTGTTATATTAAGGTAGAGTGATTTCATGTTTCCTATTCAAAACGTCCAAGTAAGTATGCTTCAATttaatgagtttgatttgccaTATAATCTAAATCCAACGAAAACTTTCAAATTTGTCGCATTGGGCTTATTCTCAATGTATCCCCCCTCGACCTATTAGCCTCATTCGCAAAGTGAGTCTtagtgctcatcctttcatatgaaaatgagatttcagtcacatgcaaattaaactcattttcatatgaatggttgtgcaccaggcctcgctttgaaagagaggctttaggtaactcggaaatggtctattttacATAGTACCCAGTTCGTCCGCGGATGGTGTTTCCACGCGCGTTACGTGGATATTTTCGTGGAGGAATAGAATGCGTGCTGTCCAAGTGAGAAAATTCGCTTTACAGGATTGGAGATATCTGGAACTCCTGAGATTTCCGAAAACAGGTTGGAGTAAACTAAAAACAACTTGAGAGGGAGTTAACTTGACAATATGTCCTATGTGAGGAATTAACTCTGCTAACCCTTCGATTAATCTTTTTTTGAGTTATCATGATCGCTGTTTTTAACGGTGTCTTTGTGAGTATATTTTTCAGGGGATCCTCTTTGAGATTAAATCAAGATTCTGTCTGTTGCGTAGTTTGTGCTTTAGCACGTGTATGGTGGAGCGAGAGGGCTGTCAGTACCTGCGCTATATAGTCTAGTGACAGATAACACTTTCATGAGAACATTGGAAAAACTGTTTATTTCTGTTAGAGTAATAGTTATACTTGTAATTGATATTGTATGATTCTATCTACTTTTATTTCTCGTTA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8BFR2	Follistatin-related protein 5 OS=Mus musculus OX=10090 GN=Fstl5 PE=2 SV=1
Q8N475	Follistatin-related protein 5 OS=Homo sapiens OX=9606 GN=FSTL5 PE=1 SV=2
Q62632	Follistatin-related protein 1 OS=Rattus norvegicus OX=10116 GN=Fstl1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001523 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13927 all species →	Ig_3	Immunoglobulin domain	Domain	Interproscan
PF07648 all species →	Kazal_2	Kazal-type serine protease inhibitor domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002350 all species →	Domain	Kazal domain	Interproscan
IPR011992 all species →	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR007110 all species →	Domain	Immunoglobulin-like domain	Interproscan
IPR036179 all species →	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR036058 all species →	Homologous_superfamily	Kazal domain superfamily	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR003598 all species →	Domain	Immunoglobulin subtype 2	Interproscan
IPR050653 all species →	Family	Protease Inhibitors and Growth Factor Antagonists	Interproscan
IPR003599 all species →	Domain	Immunoglobulin subtype	Interproscan
IPR011044 all species →	Homologous_superfamily	Quinoprotein amine dehydrogenase, beta chain-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10913 all species →	FOLLISTATIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005615 all species →	Cellular Component	extracellular space	Interproscan
GO:0007275 all species →	Biological Process	multicellular organism development	Interproscan
GO:0030154 all species →	Biological Process	cell differentiation	Interproscan
GO:0030510 all species →	Biological Process	regulation of BMP signaling pathway	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSSYXP00000031077.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Micromussa lordhowensis tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Micromussa lordhowensis, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →