Gene detail

Detailed information of ENSSYXP00000031594.1 in Micromussa lordhowensis

Genomic Location: :...
NR annotation: XP_020628298.1, lysosome-associated membrane glycoprotein 3-like [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

ENSSYXT00000033233

GCAAGGCCTTGTGCAAAGTGCTTTCTAGAGCAATATCTACACCTAAGGATAACTTTAGTTCGACGGCGATCATGGCTTTTCTCAACCGTGCCTTTGTAGTGTTTGTTCTTTGTTCAGTTCTTGGTGAATGGACAAATGTTGCAGCTGTAAATGAAGCTACAGCCATACGTATTGTTGCAAGCCCCACCATTACGAAGAATGGAAGCAGCCTTTCAAATGCAACATCTCACCACATGATGTCCACACCTTCTCATAACATGTCATCTGCCATGCCTCATAACACGACTGTGACACCTCACAACACGACCGTCATGCCTCACAACATGACTGTCACGCCTCACAACATGACAGTCATGCCACACAACACAACAATCATGCCACATAACACAACAATCATGCCACACAACACGACAATCATGCCACACAACAGCACTGTCATGCCACCTCATAACATGACAATCACACCATCGTCAGCACACACTGTGATGCCAACATCTTCCATGCATCCATCACCAACACCAACACCAGCACCAAAACGAGGCAACTTCTCGGTAAAGGAGAACAATACTGTCTGCCTGTTTGCCTACATGGCCGCCAAATTTGACATCATGATTGTTTCACAGACGTTGAGCCTTAAGCTACCAACCAATGCTACTGTGAGAGGAGAATGTGGTAAATCTGTCCAAGAACCTTACATTATCTTGAACTGGCAGACCATGGAAGGTTACAGCTGTAATTTCACCATCCATTTTGTCACGGTAGAAGGTGAAACTTTGAAGGCATCCACTAAAGGTCGCTGGGCAGCTGCCAACTTGACATTCTCATTGAAAATGAGTAGTGATGCTGAGCCTGTCTACACATTCTATTCTGCACGAGGCCCACTGGAGCAGGTGTCTGCTGATTACGGTTATGCATTTGAATGCCGGACACAACCCATCAACTTCAAACTTAATGCCAACAATTCCAATGTTAATGTTACCTtaacagatattgattttcagCCTTTTGATGTGCGGGATGGACAAATTAGCAATGTGGAAAAATGCTACCCTGCAACAGAACCAACCACACCAAACCCACAGACAACGCCAGCAACCAAGTCAAATAGCCATGTGGTGCCAATTGCTGTTGGTTGTTCTTTGGCTGCACTTGTTATTATCATTGGTGTCGGTTACATGATCGGAAGACGCCGCCGCATGAGTAAGGAAGGGGCTGGATATCGCAAGCTGTGAACATGTAGCACCACAGGCAGACAGATGAAGAGTGAAAAACAGGAAATAAACAAGGGGAAAACAGGAAGTAAACTTGCAACACAGTTAGTAGGCTTGTGTTAGAGTATGATCAGGCATATATTTGGGTAATTGTTTCTCTCATAAGGAgtgatttctttttgtttaaggTGATTAACAGTCTGAACTGAGTATTATCTTTTCATATTGTTTTATGATTGACTCGAACAATGTGCTTTCCAGAAAATATGGATACTCCCCCCAGAGAAGAGATATGAATTTCCGCGGTAGTGGGGggttctgtaagaccaaaaaatttaaagagaTGAATGAAgcttaatagaccaatttcgctACATAAAAATTCAACCTAAAACactagacctcagtacgaggctctggagaatagctacagagtttgtggtgtttattccccagagcctcgtgctgaggtctattgtgttaggctgaattttgatatatcaaaattggtctattggaatttccagaggggtggggtgggggagtCTCCCCTTCCCCCTATGAGGGAGGtatgatattttctggaactacacatcaaTTGAACTTTGTGCCTTTCCTTCGTTATTTGAGATGCTGTCATTGCtatcgtcatcatcatttctTTTTGTGCCTTTATTCACATGAGAGAGTTTAGATCTGTCTACTTAACCCCTCTACATCACTCCATCAATGAGTGTAACATAAAAAAGTCTAAGTTTTAAGCAAAccaaattgtcaaaatctaaaTCAACAGTACAAAGTGCGCAGTCAGTCTGTTTTTCATCATTAAGTAGTATTCACTTGTGGTAATCTGTTGAAATTCTTCATCAGAAAGCATATTGACCAGTAAAGGAGCAGCTTAGTTGTTAGAAATTGGTTATAGATCACTAGAGCAGTGCAAGGTTGATTCTGATAGGATGATTGCCAGCTTGGCAATTAAATGACACTCGTGGACACAAACCTTTCAGTTTTGTGGGTCAT

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21222	Lamp2_2nd	Lysosome-associated membrane glycoprotein 2, transmembrane segment	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR048524	Domain	Lysosome-associated membrane glycoprotein 2-like, transmembrane domain	Interproscan
IPR002000	Family	Lysosome-associated membrane glycoprotein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11506	LYSOSOME-ASSOCIATED MEMBRANE GLYCOPROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0016020	Cellular Component	membrane	Interproscan
GO:0005765	Cellular Component	lysosomal membrane	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0031902	Cellular Component	late endosome membrane	Interproscan
GO:0072594	Biological Process	establishment of protein localization to organelle	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K06528	LAMP1_2, CD107; lysosomal-associated membrane protein 1/2	-	CD molecules	ko04090	deepkoala