Gene detail

Detailed information of ENSSYXP00000034704.1 in Micromussa lordhowensis

Genomic Location: :...
NR annotation: XP_020623348.1, heterogeneous nuclear ribonucleoprotein A/B-like isoform X2 [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

ENSSYXT00000036559

TCCTGTTGTCTTGGCCAATCAGAGGAGTTATTTTCAGCTGCACGTGATCACTTGCGGGTTTTCCCAGCATGCTCTTGATTGAACCGGAATTTCGAGCATTTGGCGCCTCGAGCTTTCAGTTTGAAGAGAGTTGTTCGTGGAATGGCGGACATTTGCAGCTGTAAGCGATGTTTATAAGTTAAAAATCAGCTTTGTAACGCTCTAGGGACCTTGCGCTATGGCAGCCAACAAAGTTGTCAATGGTATCACGAGCCAGGCGGCCGAAGCGAAGAAGAGAATGACAAAAGAGGACGATGAGGGCAAGCTCTTCGTGGGCGGACTCAGCTATGAAACTACCAAAGAAACTTTGACGGATTATTTTAGCACTTTTGGTGAAGTTATCGGCGTTGAAATAAAGATGGATGCCTTAACAGGTCGCTCAAGggGCTTCGCATTTGTACAGTTCAAGGATGCCAGCGAAGCAAACACGGTCTTACAACACTCAGGACCTCATTTATTAGATGGCAAAACTGTTGATCCCAAGCCAGCAGCACCTATAAACAAGccaCCTCATTTAAGagtaaagaaaatatttgtgGGAGGTCTTAAACCAGAAATTACTGACCAGCAGATTAGAGATTATTTCCGTGATAAGTATGCAACACAGGTGAGAGACACAGAATACGTCACTGAACACCAAACGAACAAGAGAAGAGgcttctgttttgtttcctttgatTCTGAGGATACTGTAGACCTGATTTGTGAACAACAGTTCCATCATATTGATGGTAATAAGGTTGAGGTAAAAAGAGCTCTTCCAAAGGAAGTCCAACAACAGCAAGCTGCATTGCGAGCTGCAGTTGCTGGAAGAGGAATGATTCCAACCATTGCAGCCACAGCATTTGGAGTTGTACCTGGAAGAGGAAGAGCTGCCACTGGTTTAAGCAGAGgTCCTTTTCGCACTGGTACAGGTGCAGGGGTTGGTGGAATCAATCTCACTGCAGCAGCAGCTGCGGCAGCCTACAACCCAACCTATGCAGCAGCACTGTATGGTGCAGCATTTGGCACAGCTGGAGCTTATGACCCCACTGTCTACCCAGGTTCATATGCTGCAGGTCTCCAAGTCCATCCAAGCTACTCCCCGACATTTGGTGCCACAGCATCAGGGTACCCCGGTGGGGGATATGAATACCCTTATGGAGCAGCAAGAGATATCCGATATCCAGAAAGTGAATAGGAGTTGTCCAGGACAATATTTAATGTAAATTCATCAGTAATGTTTTGTGAATTGTTGTACATTGTATATGTAGTGATATAGTTCGATGATGGAACATCAATTATATTTTTTAGCTTTCTAGACTAGTGAATTTGATGATGGAGTACTTGTTATTTGTCATAGCTTTGCTTGGTAGATTACCAGTGATTCCTTATAGAGCAGTCTTCTAATGGCTTGTAAAAGTGCTTGTCAAGCACATCCATGACTAGCAGATTTGAAATCTTGACATCAGATTCTGTGATCCATGGTTTCCTTAAATGGTTCATTGACAGTGGCTTTCACAATATTTCCCTCTGACTTTACACCAATTATTGCATATGTTTGAATTTGTTGCCAGTGGGCATAGAATGATTGTTTTAAGGGTTTCTATTTTTGACATGCACACGGTTGTTGGAAAACTGCTCTAGAAGACTACTCTTCAATCTTGTTTTGCTGGAATTGTGATTGACTGGTCAACACTGGATTCATATCACATTCACAAGTTTTGGTTTTGTCTGGTTATTGTTGTTTCCTGTTTAATTAAATTAGGTTTTGTTGCTGTTATTTACAGTGATGTAAATACTGAAATGAACACTACCTCCTTCCattatgtatatattttttattttgaaatgctCTTACAGAATTTCCGCGATCTCATGATCATCGTGCATGTGTTCTCTTAATAAGTTTAATATGAATTTTAGTAAAATCACAGTCTTATCTTCCATTTTTTCATTACATTGACAGAGAAATAGTATTGTGGCTAATTAAACAGCAAAACCAAAATTTGTTATGTGCTACATGATGCAGTAACTGTAAGTTTGATTTGAAAATAGCCAAGATTTGGTACACCACAACAGTATCTGTAAGATCTACATACTTTAGGTGTACAGACCAGATGTAATTACCAAACAGGAGAGGCAATGGTGGTCGTGGTTTAAGAAATGATGCTATCCATTCGTTGTGTA

Protein

Uniprot

Uniprot term	Description
Q99020	Heterogeneous nuclear ribonucleoprotein A/B OS=Mus musculus OX=10090 GN=Hnrnpab PE=1 SV=1
Q7ZX83	Heterogeneous nuclear ribonucleoprotein D-like-A OS=Xenopus laevis OX=8355 GN=hnrnpdl-a PE=2 SV=1
Q99729	Heterogeneous nuclear ribonucleoprotein A/B OS=Homo sapiens OX=9606 GN=HNRNPAB PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48033	RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0000790	Cellular Component	chromatin	Interproscan
GO:0005654	Cellular Component	nucleoplasm	Interproscan
GO:0010468	Biological Process	regulation of gene expression	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K14411	MSI; RNA-binding protein Musashi	-	Messenger RNA biogenesis	ko03019	deepkoala