Genomic Location: chr11:15403404...15415541
NR annotation: XP_020611069.1, adenylosuccinate lyase-like isoform X1 [Orbicella faveolata]
Species Micromussa lordhowensis · all data for this species · gene families
| CDS |
| ENSSYXT00000039787 |
| Transcript |
| ENSSYXT00000039787 |
| Protein |
| ENSSYXP00000037784.1 |
| UniProt accession | Description |
|---|---|
| P21265 | Adenylosuccinate lyase OS=Gallus gallus OX=9031 GN=ADSL PE=2 SV=2 |
| P54822 | Adenylosuccinate lyase OS=Mus musculus OX=10090 GN=Adsl PE=1 SV=2 |
| P30566 | Adenylosuccinate lyase OS=Homo sapiens OX=9606 GN=ADSL PE=1 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0003303 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF10397 all species → | ADSL_C | Adenylosuccinate lyase C-terminus | Domain | Interproscan |
| PF00206 all species → | Lyase_1 | Lyase | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR004769 all species → | Family | Adenylosuccinate lyase | Interproscan |
| IPR019468 all species → | Domain | Adenylosuccinate lyase C-terminal | Interproscan |
| IPR022761 all species → | Domain | Fumarate lyase, N-terminal | Interproscan |
| IPR020557 all species → | Conserved_site | Fumarate lyase, conserved site | Interproscan |
| IPR008948 all species → | Homologous_superfamily | L-Aspartase-like | Interproscan |
| IPR000362 all species → | Family | Fumarate lyase family | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR43172 all species → | ADENYLOSUCCINATE LYASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0004018 all species → | Molecular Function | N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity | Interproscan |
| GO:0009152 all species → | Biological Process | purine ribonucleotide biosynthetic process | Interproscan |
| GO:0003824 all species → | Molecular Function | catalytic activity | Interproscan |
| GO:0005829 all species → | Cellular Component | cytosol | Interproscan |
| GO:0044208 all species → | Biological Process | 'de novo' AMP biosynthetic process | Interproscan |
| GO:0070626 all species → | Molecular Function | (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamido) succinate lyase (fumarate-forming) activity | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K01756 | purB, ADSL; adenylosuccinate lyase | EC:4.3.2.2 | Alanine, aspartate and glutamate metabolism | ko00250 | deepkoala |
Genes whose expression across the transcriptome samples of Micromussa lordhowensis tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Micromussa lordhowensis, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
