Gene detail

Detailed information of ENSSYXP00000039654.1 in Micromussa lordhowensis

Genomic Location: chr11:9006784...9020092
NR annotation: XP_020613164.1, protein cycle-like [Orbicella faveolata]
Species Micromussa lordhowensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9I8T7	Basic helix-loop-helix ARNT-like protein 1 OS=Gallus gallus OX=9031 GN=BMAL1 PE=1 SV=1
Q6YGZ5	Basic helix-loop-helix ARNT-like protein 1 OS=Tyto alba OX=56313 GN=BMAL1 PE=2 SV=1
O88529	Basic helix-loop-helix ARNT-like protein 1 OS=Mesocricetus auratus OX=10036 GN=BMAL1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001019 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00010 all species →	HLH	Helix-loop-helix DNA-binding domain	Domain	Interproscan
PF14598 all species →	PAS_11	PAS domain	Domain	Interproscan
PF00989 all species →	PAS	PAS fold	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000014 all species →	Domain	PAS domain	Interproscan
IPR050933 all species →	Family	Circadian Clock Transcription Factors	Interproscan
IPR001067 all species →	Family	Nuclear translocator	Interproscan
IPR001610 all species →	Repeat	PAC motif	Interproscan
IPR011598 all species →	Domain	Myc-type, basic helix-loop-helix (bHLH) domain	Interproscan
IPR035965 all species →	Homologous_superfamily	PAS domain superfamily	Interproscan
IPR036638 all species →	Homologous_superfamily	Helix-loop-helix DNA-binding domain superfamily	Interproscan
IPR013767 all species →	Domain	PAS fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23042 all species →	CIRCADIAN PROTEIN CLOCK/ARNT/BMAL/PAS	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0034751 all species →	Cellular Component	aryl hydrocarbon receptor complex	Interproscan
GO:0003700 all species →	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0005667 all species →	Cellular Component	transcription regulator complex	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0046983 all species →	Molecular Function	protein dimerization activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSSYXP00000039654.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.