Gene detail

Detailed information of ENSSYXP00000039796.1 in Micromussa lordhowensis

Genomic Location: not available for this species
NR annotation: PFX32026.1, KRR1 small subunit processome component-like [Stylophora pistillata]
Species Micromussa lordhowensis · all data for this species · gene families

Sequence

CDS

ENSSYXT00000041975

ATGCACATACATTTAACATTTTTGTTGTTCATTCGTTTAGCTTGGGATCACGAGGGTATTGATCACTGGAAAATTGAATCGTTTACAAGTGAAGACAATCCACATGGCGTGCTGGAAGAGAGCTCATTTGCAACCTTGTTTCCTAAATACAGAGAAAAGTATCTGCGAGAATTCTGGCCTTTGGTAGAAAAGAAACTAAAAGAATATGCTCAGCGTGCTCTTGAAGATGAGGTGGCATGTGACATCATTAAGATAGGATCGCTTGTTCGAAACAGAGAGAGATTTGTCAAGAGAAGACAGAGGCTTATTGGTCCAAATGGAGCAACTTTAAAAGCTCTAGAACTGCTCACACAATGTTATATCATGGTGCAAGGAAACACTGTTGCTACACTGGGCCCATATAAAGGACTAAAACAGGTTCGTAAGGTGGTAGAAGACACAATGAAAAATATTCATCCTATTTATAACATCAAGACACTAATGATCAAAAGAGAATTAGCTAAGGATCCGGAGTTAAAAAATGAATCTTGGGACAGATTTCTGCCTAAGTTTACACAGAGAAATGCAAAGAAGGTCAAGAAATCCAAGTTTAAGAAAAAGGAATACACTCCATTCCCTCCACCACAAACAGAAAGCAAGATTGATAAACAGTTAGCAAGTGGTGAATACTTTCttcaagagaaagaaagaagattAAAGGCCCAACAGGAAAGAaaggtatTGGATGTGGAGGcattcaaaaagaaaataaaaaattcccAGGTGAGATCAGTTTGCTATAgcagcttttttgtttgtttAATGCAGTCATCATCACAAAACACATGGATACCACATTGCCGCGAGTACTGCAATGGAAACGTAGCCAAGTTCTATTGCCCAGAATGTGCGGCAATGTTTTGCGGTAGCTGCTACGACAGAGAACATTGCGGAAATGAACGCAAATCGCAGCATGGAAAACTCACTGAGCTGAGGGCCATCTGCAGCGTTCACAAACATACTCTAGATTACTTCAACCTTACGCTTCTTCAGCCCATGTGCGTTATTTGCAAAAAGGAAACCATACTTACTTCAGAACATGAACACCATGTCATCGACCATATTGAGGCGACTGTACCAAAGTTAAGATCTCTCATGGAAAAGAAACTAGAAAGTGCATCCGAAATGATTGACAGATTGAACCATGAGTTAGCTAGGGTAGAAAATGGCGCAAGAAATACAATGATTGCATCGGTCAGTTTCATCCAGTGTTGTTTCGCAAGGCTACGGCAAATCCTTGATGAGAGAGAAGTTGAACTTTCGACGAATGCAAGAAAATACTTTGATGACTTTGTGGAGGTTGGTGAAGGAAGAATGGAAGCGCGGAATGTTTTGAAAGACCTCAAGGCTCTGTCTGAGGAAGGAAAATTGCTTTTAGATAAAGATGCCAGAAGTCTTGTGGTGGAATTTCCATCATTGTTTATGCGACTCAAAGACCTGTGTGGTTCAACAGTTTGTGAACGACAGACCAAGAAGTTGAAAATTATAATTGATTTTGAGAAAGATATTCTTGAACAGCTAGGACAAGTTGGAACCATGAAGTCATACTCTATTGAACAAACTGCAGGTAGAGTGGGGAATATGGATGTTTTGCCAAATAACAATGATTACAGTAGCTATTCAGATTGTAAAAGAGGTATTGTAAATttaattgtatttatttattattattattattattattgtGACTATTTGGTCCTTAGTTATTCAAACAAATTCACTTGTCTTGTGCAAATTAATCTAGGTATGAAGAGGCATTTCTCTCACCCACCCTCTCAGGAAGAACCTAGCCCCAAGCAAGCCAGAAATGGTGATACCCATGTGGTCAGTTTAGACTTGAGTGACGAGTCCGACAAGTCACTGAAAACTCCACTGAAAGCTACAGCAGTCATGTCATTCAAAATTACATCACCTTCACCTAGAAAGCGAACTTGCAAACCAACTGCCCGGAAATCTGCACAATCACCGGAGTGGACGCCAGCCTCTCCCATTGAAACACCCGCTGTGGGTTCACCCAGAAGGAAAAGAGGAGGAGAACTAAGCAAAGAGTTTATGAAATGTGACGTCATTCTGACAGAGCTCTGGGCTCAGGATGAAAGCTGCCCATTTGTACGCCCTGTGGATAAGAAACAGTCACCAGATTACTATAAAGTCATCAAGAATCCCATGGACTTGTCCATTATCAAAGAAAAACTCCACTCTCTCCGGTATACATCTGCTGTAGATTTTGTGAAAGATATACGGTTGATGCTGAGTAACTGTTCAATATATAATCAGCCTGGCTCTTACGTGTTTGCTGCTGGTCAAGCGTTGGGGAATATCTTTAACCGTTTGACGAAAGAAAACTTTCCTAACTTCGAAAATGTCCTTCTGGAGGATAGCGAGAATGGTTTCGCTTCCAACAAATAG

Transcript

ENSSYXT00000041975

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q3B7L9	KRR1 small subunit processome component homolog OS=Bos taurus OX=9913 GN=KRR1 PE=2 SV=2
Q8BGA5	KRR1 small subunit processome component homolog OS=Mus musculus OX=10090 GN=Krr1 PE=2 SV=1
B4G9L6	KRR1 small subunit processome component homolog OS=Drosophila persimilis OX=7234 GN=dbe PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005426 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00439 all species →	Bromodomain	Bromodomain	Domain	Interproscan
PF21800 all species →	KRR1-like_KH2	KRR1 small subunit processome component, second KH domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001487 all species →	Domain	Bromodomain	Interproscan
IPR048549 all species →	Domain	KRR1 small subunit processome component, second KH domain, eukaryotes	Interproscan
IPR048548 all species →	Domain	KRR1 small subunit processome component, second KH domain	Interproscan
IPR036427 all species →	Homologous_superfamily	Bromodomain-like superfamily	Interproscan
IPR018359 all species →	Conserved_site	Bromodomain, conserved site	Interproscan
IPR036612 all species →	Homologous_superfamily	K Homology domain, type 1 superfamily	Interproscan
IPR004087 all species →	Domain	K Homology domain	Interproscan
IPR000315 all species →	Domain	B-box-type zinc finger	Interproscan
IPR024166 all species →	Family	Ribosomal RNA assembly KRR1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12581 all species →	HIV-1 REV BINDING PROTEIN 2, 3	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0005730 all species →	Cellular Component	nucleolus	Interproscan
GO:0032040 all species →	Cellular Component	small-subunit processome	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSSYXP00000039796.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.