Gene detail

Detailed information of ENSSYXP00000040532.1 in Micromussa lordhowensis

Genomic Location: chr11:20664014...20697255
NR annotation: CAH3039353.1, unnamed protein product [Pocillopora meandrina]
Species Micromussa lordhowensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ENSSYXT00000042714

ATGattatttatttattgtggCCAATTTTTGTGTACTACCCACTGACTCACTGGATAAGAGGAAAAGGATGGCTTCATCATCACTTTGGAATTGTTGATCAAGCTGGGAGCTTGACTGTGCATACCTCAACAGGATCATCTGCTCTTGTTTTCACCAAGATCCTTAAAGAGGTTCACGAAAATCGTACACAGAAACAAAACCAACAGAAGGAGCACCTGCATCCTCAAAATGTGTTTCTAATTGTTGGAGTGTTAATGACCTCTCTAGGGTGGTACTCTGTAAATATTGGATCTGTACACAAGTTCAATGATGCTGCGATTCTTTCATTTATCAACTCCCACCTATCTGTTTGTGCATCTTTATTGAGCTGGTTAATAGTGACTTATTTGACGAAgaagaacttgaaaatgacAGAACTTCTACAAGGCATCATGGTTGGTCTTGTAGGTGTAAGTGCATCTTCTGGTTCAATAGAGGTATGGGCCTCACTGATCATTGGACTTGTCGTAGGTCTTATATCATCTGTTGTCTCATGGTCAATTCAGAAATACCGTCCTTTATGGACCAGCACAGAGGTGCATGACATCACATACACCCATGGTGTCCCTGGTGTTCTTGGAGCAGTAGCAGCTGGTCTGTTCAGCAAGTCGTCTCAAGACGTGACAAGTGCCGATGGCGCTTTCTATTCCAACAGTGCCCAGCTAGGTGTTCAGTTACTGGGCGTGCTTGTCACTGTCACGTGGTCTGTTATGTGGACCTACCTATTGAGCTGGCTGATAAGACTAACTGTTGGCTTTAACACAATTACTACAAACGAAGCTTTTGGCTCCTATGAGACCCAGAATATTTCACCGTCATCTGCTTTCAGCAAAGAAAAGGAGTCTCTTCACAAAAAGCTTTTCAAGGCCGTGGCTGCGGGCGATTTGCAAGAACTAGACGCCTTGCTTGCTCACCAAGTGTCTTTTGGAGTGCAGAACTTTGACAAACGAACACCACTTCACGTGGCCTCTTTGCATGGACATCTCCATTGCGTTAAGTTCCTTCTGCGACAGCCTGGTGTAGACATTCACGCGAGAGACCGCTGGAGAGCATCACCGCTTTCTGAAGCTGTCCAGTCTGGTCATGATCAAGTAGTACAGAGTCTGTTACGACACGGGGCTGGTTGGTGTGAAGATGGAGTTGGCGACCTGCTGTGTAGCACTGTAGtgAAAAACGACGCGGAGGAGCTTCAACGTCTTGTATCACTGGGTGTGGATGTTGATGCACCAAACTCCGACGGGAGCACTGCGCTTCATGTTGCAGCCGCTGTAGGCAGTCGAGGAGTAGTGCAGTTCCTCACTGATCACAGAGCGGATATCAATGCTGTTGACTCGTTAGGAAATACGCCTTTGAATTACTCGGACATGCACGAGCATCGCGCTGTCAGCCAGTTATTGGAGGGTCTGGGCGCCAGGAGGTTATCTCATCACTACAGCATGCACGAAATCTGTGAAGTGGCCAGCAAAGGAAACCTACAGATGCTCAGACACATGGTGCATAATGGAGCCACAGTCTGCTACAGAGACTTTAACAAACGAACGCCACTACATGTCAGTGCAGCTGAAGGCCATTTGGACGTGGTTAAGTTTCTTCTGTTGCAGCCTGGGACCAACATCAACTCTAGAGACAAAAACGACTTCACTCCACTTCTCGATGCCATCATGAATGCCCACCATGGAGTTGCCGAGCACTTGAAGGCACGTGGAGGGACCTTGAGTGAGTGCAAGTTGGCTCAACTGATGACAACCGCTGCCAGCACCGGGGATACAAGGACCCTTAAACGATTGATAAGATGGACCGGTCACGTGAACGTGTCTGACTTTGATGGACAGACCACACTCCACACAGCAGCGATGTATGGCAGGCTCAATATCGTCAATCTGTTGTTGAAAGAGGGCGCAGATGCGACGCTTGTTAATCGGTATGGCCAGATTCCCTTGCAAGTGGCAGTAGCAAATGGACATACAGCGGTTGAAAAGGAACTACGAAAATTTCTCAAGCTCACAGAAGAAATTCTCTTAGCCGACCACGTGACTGCGACGTGTTACAGCCCGCAAGCGagaaaaagaggaagaaaacaCAGAACAGAACCGTCACAGTACAATTACTCAAAACGGGACTCTTGGACCTCAACGGAAAACTCGCTGGAAATACGCCGACATGTTGGCTACAGCGTAAATAATAGCGTTCACTCttcaaaagaaataatcaactTAGCAGACGTACGAGCGCCGCTGGAAGGGAATGACAAGCCTCGGCCTCCTCTTCTACATCTTAGTACACAATCTATT

Transcript

ENSSYXT00000042714

GGATTCAGCTTTGCAATTTACAAGGCAGGAACCAGGCCATGtcatttttcaaaccaaatcCTTGTACATGCCCTCATTAACCTTGCTGTTGGCTCACTGTTGTGGTATTTTGTGGGTTACTCTCTCTCATTTGGACCATCTCAGAAGGGCTTAATTGGTAGCCTTGATGATGCATTCCTTTTTGGTTTGTCTGGCACCAACTGTTCCTCACATTCTGATTCTGTGCCAGGAATTCTGTTTGCAAGTTTTGAAATGATGCTTGCTATCATTACTCCATTTATGCTCTTATCTGCATGattatttatttattgtggCCAATTTTTGTGTACTACCCACTGACTCACTGGATAAGAGGAAAAGGATGGCTTCATCATCACTTTGGAATTGTTGATCAAGCTGGGAGCTTGACTGTGCATACCTCAACAGGATCATCTGCTCTTGTTTTCACCAAGATCCTTAAAGAGGTTCACGAAAATCGTACACAGAAACAAAACCAACAGAAGGAGCACCTGCATCCTCAAAATGTGTTTCTAATTGTTGGAGTGTTAATGACCTCTCTAGGGTGGTACTCTGTAAATATTGGATCTGTACACAAGTTCAATGATGCTGCGATTCTTTCATTTATCAACTCCCACCTATCTGTTTGTGCATCTTTATTGAGCTGGTTAATAGTGACTTATTTGACGAAgaagaacttgaaaatgacAGAACTTCTACAAGGCATCATGGTTGGTCTTGTAGGTGTAAGTGCATCTTCTGGTTCAATAGAGGTATGGGCCTCACTGATCATTGGACTTGTCGTAGGTCTTATATCATCTGTTGTCTCATGGTCAATTCAGAAATACCGTCCTTTATGGACCAGCACAGAGGTGCATGACATCACATACACCCATGGTGTCCCTGGTGTTCTTGGAGCAGTAGCAGCTGGTCTGTTCAGCAAGTCGTCTCAAGACGTGACAAGTGCCGATGGCGCTTTCTATTCCAACAGTGCCCAGCTAGGTGTTCAGTTACTGGGCGTGCTTGTCACTGTCACGTGGTCTGTTATGTGGACCTACCTATTGAGCTGGCTGATAAGACTAACTGTTGGCTTTAACACAATTACTACAAACGAAGCTTTTGGCTCCTATGAGACCCAGAATATTTCACCGTCATCTGCTTTCAGCAAAGAAAAGGAGTCTCTTCACAAAAAGCTTTTCAAGGCCGTGGCTGCGGGCGATTTGCAAGAACTAGACGCCTTGCTTGCTCACCAAGTGTCTTTTGGAGTGCAGAACTTTGACAAACGAACACCACTTCACGTGGCCTCTTTGCATGGACATCTCCATTGCGTTAAGTTCCTTCTGCGACAGCCTGGTGTAGACATTCACGCGAGAGACCGCTGGAGAGCATCACCGCTTTCTGAAGCTGTCCAGTCTGGTCATGATCAAGTAGTACAGAGTCTGTTACGACACGGGGCTGGTTGGTGTGAAGATGGAGTTGGCGACCTGCTGTGTAGCACTGTAGtgAAAAACGACGCGGAGGAGCTTCAACGTCTTGTATCACTGGGTGTGGATGTTGATGCACCAAACTCCGACGGGAGCACTGCGCTTCATGTTGCAGCCGCTGTAGGCAGTCGAGGAGTAGTGCAGTTCCTCACTGATCACAGAGCGGATATCAATGCTGTTGACTCGTTAGGAAATACGCCTTTGAATTACTCGGACATGCACGAGCATCGCGCTGTCAGCCAGTTATTGGAGGGTCTGGGCGCCAGGAGGTTATCTCATCACTACAGCATGCACGAAATCTGTGAAGTGGCCAGCAAAGGAAACCTACAGATGCTCAGACACATGGTGCATAATGGAGCCACAGTCTGCTACAGAGACTTTAACAAACGAACGCCACTACATGTCAGTGCAGCTGAAGGCCATTTGGACGTGGTTAAGTTTCTTCTGTTGCAGCCTGGGACCAACATCAACTCTAGAGACAAAAACGACTTCACTCCACTTCTCGATGCCATCATGAATGCCCACCATGGAGTTGCCGAGCACTTGAAGGCACGTGGAGGGACCTTGAGTGAGTGCAAGTTGGCTCAACTGATGACAACCGCTGCCAGCACCGGGGATACAAGGACCCTTAAACGATTGATAAGATGGACCGGTCACGTGAACGTGTCTGACTTTGATGGACAGACCACACTCCACACAGCAGCGATGTATGGCAGGCTCAATATCGTCAATCTGTTGTTGAAAGAGGGCGCAGATGCGACGCTTGTTAATCGGTATGGCCAGATTCCCTTGCAAGTGGCAGTAGCAAATGGACATACAGCGGTTGAAAAGGAACTACGAAAATTTCTCAAGCTCACAGAAGAAATTCTCTTAGCCGACCACGTGACTGCGACGTGTTACAGCCCGCAAGCGagaaaaagaggaagaaaacaCAGAACAGAACCGTCACAGTACAATTACTCAAAACGGGACTCTTGGACCTCAACGGAAAACTCGCTGGAAATACGCCGACATGTTGGCTACAGCGTAAATAATAGCGTTCACTCttcaaaagaaataatcaactTAGCAGACGTACGAGCGCCGCTGGAAGGGAATGACAAGCCTCGGCCTCCTCTTCTACATCTTAGTACACAATCTATT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O28525	Ammonium transporter Amt3 OS=Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 / VC-16) OX=224325 GN=amt3 PE=3 SV=1
O26759	Putative ammonium transporter MTH_663 OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) OX=187420 GN=MTH_663 PE=3 SV=1
O66515	Ammonium transporter OS=Aquifex aeolicus (strain VF5) OX=224324 GN=amt PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005993 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00909 all species →	Ammonium_transp	Ammonium Transporter Family	Family	Interproscan
PF13857 all species →	Ank_5	Ankyrin repeats (many copies)	Repeat	Interproscan
PF12796 all species →	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan
IPR029020 all species →	Homologous_superfamily	Ammonium/urea transporter	Interproscan
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR045319 all species →	Family	Potassium channel KAT/AKT	Interproscan
IPR024041 all species →	Domain	Ammonium transporter AmtB-like domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45743 all species →	POTASSIUM CHANNEL AKT1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005249 all species →	Molecular Function	voltage-gated potassium channel activity	Interproscan
GO:0006813 all species →	Biological Process	potassium ion transport	Interproscan
GO:0008519 all species →	Molecular Function	ammonium channel activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0072488 all species →	Biological Process	ammonium transmembrane transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSSYXP00000040532.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Micromussa lordhowensis tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Micromussa lordhowensis, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →