Gene detail

Detailed information of ENSSYXP00000040549.1 in Micromussa lordhowensis

Genomic Location: :...
NR annotation: XP_020620205.1, methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial-like isoform X1 [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

ENSSYXT00000042730

ATATCCTGTTATGCTTAAAGCTGTAAGAGGTGGTGGTGGAAAgGGAATGAGGATCGTTATGAAGCCAGACGATTTTGATGATGCTCTGGAATCGGCCAGAAGGGAATCTCTTAAGTCCTTTAATGATGATAATATGTTAGTGGAAAAGTTTGTCGACACACCAAGGCACGTAGAGGTTCAAGTATTTGCTGACACCCTTGGGAACACTGTGTACTTGTTTGAGAGGGACTGCAGTGTTCAGAGAAGACACCAGAAGATCATTGAGGAGGCTCCTGCTCCGGGTGTGTCCTCTGAGGTGCGGCAGAAGATTGGTGAAGCAGCAGTGAAGGCAGCAAAGGCTGTTGGTTATGTTGGAGCAGGGACTGTTGAGTTCATTATGGATAAAGACCAAAAATTCTACTTTATGGAAATGAACACTCGATTACAAGTTGAGCACCCTGTGACAGAGATGATCACAGCACAGGACTTGGTTGAGTGGCAGCTGAAAGTAGCAGCAGGAGAGCAGTTACCACTTCTACAAGAGGACATCAAACTAATGGGGCATTCATTTGAGGCCAGGATTTATGCTGAGGACCCTGAGAGtgaCTTTCTTCCAGGAGCTGGCCCTCTGTTACATCTTTCAACACCTCAGCCATCTGATACAATCAGAGTAGAAACAGGGGTGAGGCAAGGTGATGAAGTATCAGTGCATTATGATCCAATGATTGCTAAGCTTGTGGTATGGTCAGAAAACAGAGAACAGGCCCTGAGTTTACTGAAAGAATCTTTACAGCAATATAATATTGTAGGATTGAACACAAACATTAGCTTCTTATCGAGTCTGTGTGAACACGGCCATTTTAAAGCAGGAGACGTTCACACTGACTTCATAAAGCAACATTATCAAGACCTGTTTCCCGCGAAGGTACCGCTGAGCCGTGAGATGCTGGCTCAAGCCAGCTTGGGACTTCTTCTTTTCGAAAGACAAGAGCAAGAAAGTCGAGCTACACTGGTGAACGATCCGTTTTCGGTGTGGAATTCTACCACTAGTTTTCGAATAAACAATGTCGCTAAAAGGAGAATACGTCTCGATGATGGCGAGAAAAAGGTCTATGTTATTGTTTCTTACAACAATGATGGAAGTTTTACTTTAGAGATCGAAGGTCGACGCATGCTTGTAAAGGGAAAGCTGCAATCAGAAGGCTCAAAGATCAGCCTCATAGCCAATATAGATGGACGTATCTTTAAATCTTGGCTAGTCGATCAAGAGGGAACTCTGCACTTATTCACCAAGGACGGCTGTCACAAGGTTCGTCGCCCGGTTCCCAAGTTCCTTAGGGGTGGTCCCTCGGGAGTTTCTCAAGGTTCCGCAGTGGCACCAATGACTGGTACTATTGTCAAGGTGTTTGTTGAGCCAGGACAGAGTGTCGAAGAAGGGGAAACGTTGATCGTTATGGAGGCAATGAAGATGGAGCACGTCATAAGAGCACCAAAAGCTGGTGTAATAGAAAAAGTACTTTACGCTACCGGCCAGTCCGTGAAGAGACATGCGCAGCTGGTACAATTCCAAGAACAAGGTCAAGAAGAAAAGGAGGAGGACGCGGACGAGGAAGGGCCCGAGGCCGAGTGAGAAGAAAAACCAATACAGCGAGGTGGACTGGTACGAGGATACTACGCGAGGAAGACTGGGTTTCAAGAATTCCATGTCAAAGACAAATTTAAATTCAAGAGACTCTAATCAGTATTACGGTGATCGATCGCTTTCACACTTTGCTAAGTTAGCTTGGACCCTTTGTAAAGAGGAACAAAGTTCCCGAATAAAATGTAAACAAGAGGGGACATAAATCGGTGTATAGTAcagtttattatatagacacgagtgttttactggaaaatacatcactcgtaaaattcataccaAAACGACGTCCGGGACTCGggtggcatattttccatatcctcacaagtgaggatatcgatgatttcactgatatcaagtttgtctcttaaattgtacttcaattcgttggtgtatgatcgaaacatttTCGGGTCTTCAAGTGTTCgacaatcttcggaaattttctgAAAACGTTCGGCAACGTTCGTGTGACCTTTGGAcaagttttggagaatcttcggaaatcttcggaaaagcGTCGTCATCAGTGTGTCtataataaaaagaatatttggaTATTTATATCACCGCAGCTAATTGCTCGTTTCCATGTGTACTGGAGGATTTTAACGAACGACTTGGTCGTAATACTGATCAGACTGTAATTTCTCCTTTGGTAATGGTACGTAAAGAATCAAGTAGCCATTTAGAGTTAGAAAAAGATAAccgaagtaaaaaattatttaagGATTGCAAGACATGTATTGAGGCGAGACTGATAGGGAGAACTTGTATGTTGACCCGATTTAAACCTTCATTCACATTTTAAACAACActggaaataaatattttaaaaataaa

Protein

Uniprot

Uniprot term	Description
Q96RQ3	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial OS=Homo sapiens OX=9606 GN=MCCC1 PE=1 SV=3
Q5I0C3	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial OS=Rattus norvegicus OX=10116 GN=Mccc1 PE=1 SV=1
Q99MR8	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial OS=Mus musculus OX=10090 GN=Mccc1 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00364	Biotin_lipoyl	Biotin-requiring enzyme	Domain	Interproscan
PF02786	CPSase_L_D2	Carbamoyl-phosphate synthase L chain, ATP binding domain	Domain	Interproscan
PF02785	Biotin_carb_C	Biotin carboxylase C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001882	Binding_site	Biotin-binding site	Interproscan
IPR011764	Domain	Biotin carboxylation domain	Interproscan
IPR000089	Domain	Biotin/lipoyl attachment	Interproscan
IPR011761	Domain	ATP-grasp fold	Interproscan
IPR013815	Homologous_superfamily	ATP-grasp fold, subdomain 1	Interproscan
IPR011054	Homologous_superfamily	Rudiment single hybrid motif	Interproscan
IPR005479	Domain	Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain	Interproscan
IPR050856	Family	Biotin-dependent Carboxylase Complex	Interproscan
IPR011053	Homologous_superfamily	Single hybrid motif	Interproscan
IPR005482	Domain	Biotin carboxylase, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18866	CARBOXYLASE:PYRUVATE/ACETYL-COA/PROPIONYL-COA CARBOXYLASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0046872	Molecular Function	metal ion binding	Interproscan
GO:0004485	Molecular Function	methylcrotonoyl-CoA carboxylase activity	Interproscan
GO:0005739	Cellular Component	mitochondrion	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K01809	manA, MPI; mannose-6-phosphate isomerase	EC:5.3.1.8	O-Antigen nucleotide sugar biosynthesis	ko00541	deepkoala