Gene detail

Detailed information of ENSSYXP00000040938.1 in Micromussa lordhowensis

Genomic Location: chr11:23490619...23494506
NR annotation: XP_020626508.1, uncharacterized protein LOC110063854 [Orbicella faveolata]
Species Micromussa lordhowensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ENSSYXT00000043121

ATGTCGTCTTGCAGAAAGCCCGATCGCGATTTCTCTGAGTCCTTCGATGTTTCAGCTTGGCAGCCTACAACTAACGATAGAGTGCGATTCTCGCATAGTGAATTAGGGTATTTTTCCATCGACGAAGAGAGGTATTTCTTACACAACAAATCTAAACTCGGTGCTCTGAACCTTCCTCAGGGCTGCAGAAATCTTGATATAGATTTGAATGCGGGATTTGAACAATGGAGAGATGTACCTAGCGTGCAACAACACCTGGATTCCATATTGTACTGGATTTTACTAAACAAGGAATCCTTGATGGTACCAGGTGATATCCGGTCCAGCAAGCTCGACGTTGACGTCGTTACGTCACGAGGAAATCTCACTCGTATTCTCAACGTTCTGAATGGCACAGACGGAAAAGGACGTAAATGGACTCTGTTGGCCACGCGCTTCAGAGGAACAGTCTACCTGAGCCACGTTGAAGACGATCGGGATGATCAACAGTCCACTTTCGCGCGGAGGGTGTGTTACTGGGGAAAGAGATTTGAAGTGGAAATGACGGAGAACTGGGCACAAgcagcctcgttcccaggttcTTCATCCGGGCCACTGCCTACAAACGAGGTTGAGCGGCATGGTCCTCTCAAGGCGTACCCAGGATTCTTCTCAGTCGTCAGGTTTCAACTGGAAGATCACAGGATTGCTTTGCGAGCAGAAGTTGATGCAGAAATGCAAaGTTTAGATGAAGCGCAAAACCCACGTTCAAACTACGTGGAACTGAAGGTAACAACGGAAACAATTGTCCGTGCACCGTGGGCCTTCGAACGAAAGCGGTTGGTCCCCTGGTGGTGTCAGTCAATCATTTCAGGCACGCCCCTCATTGTATACGGCATCAGAGACTACGATGGTCACGTGAATAGCATTGACCACGTGAGAACTGACGAGATACCCTATCGTGTTGGTCGTGAAAATCTTGATCCAGAAAAATACTTGATGTTCCTGAGCGATATACTCACTTGGATAAAGGATATTGTCTGTGTAGAGGACATCACATCAGTTTACGCATTTCAGTGGGATCCAAACGCGCCTGGCAGAGGCGTGACAGCTAACGCGTTGTTGCGTGACGCCGGAAACACCTTTTTGCCTGAATGGTACGTGCGTGAGATGGAAGATTTCTTCACGCCCGCGGGTGAGCAGCGGCaaagaaaaggagtaaaaagAGGAATACAAgatgaaaaggaaagaaagggTCAAAAAGTTAAGATGAAAGGGATTCGTAAACGCATGGAAGATTCGTGGCCAAGAACGACATCCTCTCGCGAGCCGAACATTCGTGTTGAAAAGCCACATGCACGGGGACAGGACGTAACATATGCTCGCTCTAGATCGCCTGACTTTCATAATCCCAGTGACCGGGGGGGAACAGCATCAGAAATTCGTGATTTTGCGGATGAAGAACGCTACTCAAGGCGGGAATCATTCGGAAGTGAAGGATTCAAGAGAAAGCACCCACACCCTGGGTCGTCAGATTTTCATAATCCCAGTGACCGACGGGGGACAACATCAGAAATTAGTGATTGCTTCTCAAGGCGGGAATCATTTGGAAGTGAAGAATACAAGAGAGAGAACCCACACCCTGGATCGCCAGATTTTCATCATGCCAGTGACCGCGGGCGAACAACACTAGAAATTCGTGATTGCTACTCAAGGCGGGAATCATTTGGAGGTGAAGAATACAAGAGAGAGCACCCGCGCCCTGGGTCGCCAGATTTTTATAATCCCAGTGACCGAGGGGGGACAACATCAGAAATTCGTGATGTAGCGGATGAAGAACGCTACTCAAGGCGGGAATCATTTGGAAGTGAAGGATACAAGAGAGAGCACCCGCGCGCTGGGTCGCCAGATTTTCATCATGCCAGTGATCGAGGGGAGACAACATCAGAAATTCGCAATTTAGTGGATGAAGAACGCTACTCAAGGAAGGAATCGTTTGGAAGTGAAGCGTACAAGAGAGAGCACCCACACCGTAGCTCAACAAGAGAAGACAATGAGAGGCAACCATTGCTATATGAAGACCAGTTTGATCGTGATCGAACAAGCACTCGTGTTTATGACCAACGGCCAGATGCTTACTCTAATCGAAGCAGCAGAGACAAGATTGGCATAACAAGGAGGTATGAGAGAAGGCATCACGAAGATCAGGTCCAACAGCAAGCGAGGGTGGGGTCAAGGAAAACTTTTAACGAGTTGCGTTCCCAGAGGTTTAGTGAACGAGATCATCCTTCGTCCAGTGGTGACCGAATGCCCACAAAACGAGTGAAACGCGATGCAGAGTGTGAAATCCGTGGAATACGTCACCAGGACTCCACGAGATACGAAAAGCCACACAGGAACTGA

Transcript

ENSSYXT00000043121

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5HZT0	Decapping and exoribonuclease protein OS=Xenopus laevis OX=8355 GN=dxo PE=2 SV=1
A7TS67	Decapping nuclease RAI1 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294 / BCRC 21397 / CBS 2163 / NBRC 10782 / NRRL Y-8283 / UCD 57-17) OX=436907 GN=RAI1 PE=3 SV=1
Q6FWY5	Decapping nuclease RAI1 OS=Candida glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC 0622 / NRRL Y-65 / CBS 138) OX=284593 GN=RAI1 PE=3 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002769 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08652 all species →	RAI1	RAI1 like PD-(D/E)XK nuclease	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013961 all species →	Domain	RAI1-like	Interproscan
IPR039039 all species →	Family	RAI1-like family	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12395 all species →	DOM-3 RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000956 all species →	Biological Process	nuclear-transcribed mRNA catabolic process	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0034353 all species →	Molecular Function	mRNA 5'-diphosphatase activity	Interproscan
GO:0090305 all species →	Biological Process	obsolete nucleic acid phosphodiester bond hydrolysis	Interproscan
GO:0110155 all species →	Biological Process	NAD-cap decapping	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSSYXP00000040938.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.