Detailed information of ENSSYXP00000044196.1 in Micromussa lordhowensis

Genomic Location: not available for this species
NR annotation: XP_020630979.1, collagen alpha-5(IV) chain-like [Orbicella faveolata]
Species Micromussa lordhowensis · all data for this species · gene families

 Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q7SIB3Collagen alpha-2(IV) chain (Fragment) OS=Bos taurus OX=9913 GN=COL4A2 PE=1 SV=1
Q7SIB2Collagen alpha-1(IV) chain OS=Bos taurus OX=9913 GN=COL4A1 PE=1 SV=2
P02462Collagen alpha-1(IV) chain OS=Homo sapiens OX=9606 GN=COL4A1 PE=1 SV=4
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0001899 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01413
all species →
C4C-terminal tandem repeated domain in type 4 procollagenDomainInterproscan
PF01391
all species →
CollagenCollagen triple helix repeat (20 copies)RepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001442
all species →
DomainCollagen IV, non-collagenousInterproscan
IPR050149
all species →
FamilyCollagen superfamilyInterproscan
IPR016187
all species →
Homologous_superfamilyC-type lectin foldInterproscan
IPR008160
all species →
RepeatCollagen triple helix repeatInterproscan
IPR036954
all species →
Homologous_superfamilyCollagen IV, non-collagenous domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR24023
all species →
COLLAGEN ALPHAInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005201
all species →
Molecular Functionextracellular matrix structural constituentInterproscan
GO:0005581
all species →
Cellular Componentcollagen trimerInterproscan
GO:0005615
all species →
Cellular Componentextracellular spaceInterproscan
GO:0030020
all species →
Molecular Functionextracellular matrix structural constituent conferring tensile strengthInterproscan
GO:0030198
all species →
Biological Processextracellular matrix organizationInterproscan
GO:0031012
all species →
Cellular Componentextracellular matrixInterproscan
GO:0062023
all species →
Cellular Componentcollagen-containing extracellular matrixInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K06237COL4A; collagen type IV alpha-Glycosaminoglycan binding proteinsko00536deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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