Detailed information of ENSTHXP00000001548.1 in Siderastrea radians

Genomic Location: chr5:7341700...7374170
NR annotation: no NCBI-NR hit recorded
Species Siderastrea radians · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0002101 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01429
all species →
MBDMethyl-CpG binding domainDomainInterproscan
PF00856
all species →
SETSET domainFamilyInterproscan
PF05033
all species →
Pre-SETPre-SET motifFamilyInterproscan
PF18358
all species →
Tudor_4Histone methyltransferase Tudor domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001739
all species →
DomainMethyl-CpG DNA bindingInterproscan
IPR001214
all species →
DomainSET domainInterproscan
IPR016177
all species →
Homologous_superfamilyDNA-binding domain superfamilyInterproscan
IPR051516
all species →
FamilyHistone-lysine N-methyltransferase SETDBInterproscan
IPR003616
all species →
DomainPost-SET domainInterproscan
IPR007728
all species →
DomainPre-SET domainInterproscan
IPR046341
all species →
Homologous_superfamilySET domain superfamilyInterproscan
IPR041292
all species →
DomainHistone methyltransferase, Tudor domain 2Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR46024
all species →
HISTONE-LYSINE N-METHYLTRANSFERASE EGGLESSInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003677
all species →
Molecular FunctionDNA bindingInterproscan
GO:0005515
all species →
Molecular Functionprotein bindingInterproscan
GO:0005634
all species →
Cellular ComponentnucleusInterproscan
GO:0010629
all species →
Biological Processnegative regulation of gene expressionInterproscan
GO:0046974
all species →
Molecular Functionhistone H3K9 methyltransferase activityInterproscan
GO:0051567
all species →
Biological Processobsolete histone H3-K9 methylationInterproscan
GO:0070828
all species →
Biological Processheterochromatin organizationInterproscan
GO:0090309
all species →
Biological Processobsolete positive regulation of DNA methylation-dependent heterochromatin formationInterproscan
GO:0008270
all species →
Molecular Functionzinc ion bindingInterproscan
GO:0042054
all species →
Molecular Functionhistone methyltransferase activityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K11421SETDB1; [histone H3]-N6,N6-dimethyl-lysine9 N-methyltransferaseEC:2.1.1.366
Chromosome and associated proteinsko03036deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Siderastrea radians tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Siderastrea radians, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

AnalysisWhat it doesStatus
Primer designDesign PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.template foundopen →
BLASTSearch this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.template foundopen →
Expression heatmapDraw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.no expression matrix
Gene family / orthogroupLook this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.open →
Gene set analysisStart a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.open →
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