Gene detail

Detailed information of ENSTHXP00000020908.1 in Siderastrea radians

Genomic Location: chr11:6745493...6752120
NR annotation: no NCBI-NR hit recorded
Species Siderastrea radians · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

ENSTHXT00000030690

GTATCCCCCTGGATTCTTCATTCAGAAGTACTACTTTGACTTCTTCAACTATGCAGGCATTCATCGTCCTGTCAAACTCTACACCACCCCCGTCATCTTCCTCTCAGACATCACAATAACAACATCCTTCTCTGACAACACTGGTGAAGTAAAATTTGTTGCAACAGTATCATCCATTAGTTCAATGGCCATGCTTCCAAAGGGTGATATCACCATGGAATATCTGTTGCATGATAAACAAGGATTTGTTGTGGCCTCAGTGGGAGGTCCTGATATCTTTGAGGGAACACTGTCGATTAAGAATCCAATGCTTTGGTGGCCAATTGGAATGAGTGATCAGCCTGCATACCTCTACAACCTTAAGATCATCACTCGTTCTACCGTGTTTATGCTGGAAGATGTGTATTACCTCCCTGTGGGAATAAGAACTGTCAAGGTTGAGGGAACTAATTTCCTCATAAACAACAAGCCATTTTACTTCAAAGGATTTGGAAAACATGAGGATGCTGATATTCGTGGCAAAGGCCTTGATTATGCTCTGATAGCCAAGGACTTTAGCCTGCTCAAGTGGCTTGGTGCAAATAGCTTTAGGACAAGTCACTACCCCTATGCTGATGAAATCATGGACATGGCTGACAAGGAAGGAATTGTGGTTATTGATGAGTGTCCTGGAGTTGGAATTAAATATTTTAAtctaaaacaagaaaacctggaCCATCACAAAGAAGTCATGGCTGAACTGATTCGCCGCGATAAAAACAGGCCAGCGGTTGTGATGTGGTCGGTAGCGAACGAACCTTGTAGCGACAAACCATCTTCGGTACCCTACTTCGAAGCCGTTTTTAACGAGACGCGTACATTGGACCCCACAAGACCAGTGACGTTTGTGACGATGTTTAAAGCCTGGAGCGATAAAGTTGTGAAATTCTGTGACGTGATTCTTTGTAACCGTTATTACGCCTGGTACCACGACTTCGGACAAACGCAACTTATTTCCAAACAGCTGGAGGTGGAGCTACGAGACTGGTTTAACAACTATGGCAAACCGGTTATACAAGCTGAATATGGAGCCGATACTGTGTCTGGTATGCACGTGGAACCAGCAGTTATGTTTTCAGAGGAATACCAAGTGGAGTCGCTATTACAGTATTTTCCCGTTTTTGATAAACTGAAGAAGGAGTTTTTCGTTGGCGAGATGATCTGGAACTTTGCGGATTTCATGACGCAGCAGGGTACCACACGAGTAGTTGGCAATAAGAAAGGTATCCTGACACGTCAGAGACAACCAAAGGCCGCTGCCCACTTGCTACGCCAGCGATATCTCAACATCACTCTTGAACAAGGCGGTTCGAAGACTGGGGACGAGTTGTTGGACACTCTCCTTCGCTTTGAAAGTCATAATCCCGGAAACGTCATGCAACCGCCTGCACAACCAAATTATGTAACGCAACCAATGTTTTGAAGGAGCACTATCACGGGATATTCACTCAAAACTGATCGAATTGACAGATGCCTGATGAAAACTTGAAGTTGAGGTTTAATCATGAATGTCACGTGAAAAGGGACGCTATTGGCTCACGAAACAACAGTTAACAGGTCATAACTATGCAGTAGAGACAGTGTTAcaactctctcctccgcagaggcctcctacagtcgcgccttgacTGCACGTTTGGGAAAAAACGCGCGGGGAACGCTGGGAAGGGAAGAGAGAGAAAGGAggctttttccctcttcccatctTTCCCCGCGCTTCCGTCTTCTccctccagcgctcccgctcccgtattttctttcactggtatttactaacaggagcctctgcggaggagagaggtgtTACAAGAAATCTGTTAAAATAGATAGGATACAAGAGGTAGTGCTTTAAAGGATTTCGACGCTGAAAAAGCTTTTGCAAAATTCAAAGAATTTCGACCGGACcaacagaagttttcaagtttttctatGTTCCTTTCCATCAGTTTCGGTTTAGAGTTTCATTGTCTGAATGGTCAATGACAGTACTttgaagaaatagaaaaaatagCATCATGAAAGATATATTTTTGGCGATAATTATACTTCAAGgaagttttatttattttttacgttACAATTATTGAAATTCGAACGTATTTAAATCTATGTAATATTGAGTTGTAGCATACAACGCAGTAAAATAATTCAATAGTATTTAAAGTATATGA

Protein

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001389 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02836 all species →	Glyco_hydro_2_C	Glycosyl hydrolases family 2, TIM barrel domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR017853 all species →	Homologous_superfamily	Glycoside hydrolase superfamily	Interproscan
IPR036156 all species →	Homologous_superfamily	Beta-Galactosidase/glucuronidase domain superfamily	Interproscan
IPR023230 all species →	Conserved_site	Glycoside hydrolase, family 2, conserved site	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR023232 all species →	Active_site	Glycoside hydrolase, family 2, active site	Interproscan
IPR006103 all species →	Domain	Glycoside hydrolase family 2, catalytic domain	Interproscan
IPR006101 all species →	Family	Glycoside hydrolase, family 2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10066 all species →	BETA-GLUCURONIDASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004566 all species →	Molecular Function	beta-glucuronidase activity	Interproscan
GO:0019391 all species →	Biological Process	obsolete glucuronoside catabolic process	Interproscan
GO:0030246 all species →	Molecular Function	carbohydrate binding	Interproscan
GO:0004553 all species →	Molecular Function	hydrolase activity, hydrolyzing O-glycosyl compounds	Interproscan
GO:0005975 all species →	Biological Process	carbohydrate metabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01195	uidA, GUSB; beta-glucuronidase	EC:3.2.1.31	Lysosome	ko04142	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.