Gene detail

Detailed information of ENSTHXP00000039705.1 in Siderastrea radians

Genomic Location: not available for this species
NR annotation: no NCBI-NR hit recorded
Species Siderastrea radians · all data for this species · gene families

Sequence

CDS

Transcript

ENSTHXT00000059607

TCCAATTCGGACATCAATCACCGCAGAATCTTTTGATCTTGCAGAACTATTACGTAGTTTCTTCGCCGTCTCACCTTTTCTTAACACCTTTGGAGTAAAGTTCAAGaaTACAAGGCCTGTTTCGTCCACCTTATATCGGCGCGATGCAGCCCTTTCGCAAAGAAAGACAGAGTAAGCCTTATAAGTGCTCCCATTGCCCGAAGTCGTTCAAGAGTTCCAACGGCCTGAAATATCATTCGGAGAAAGTTCACGTTGATGAAGAAAACAAGATAGATGTTGGCAACGACTTCGAAGTTGAAGGAAAATCAAGAGGCTTGCCGTCCAAATCTCGGTCCATTCCGCCGGCTCTTGACTTATGCCCCGAAGTCAACTTGCTTACAGAGTTTGCTCTGATTGCCACAAGCCCCCAGAGTCCACTGGTACGAGAAGTCAGCGGTGACAACGTCGATGTCAGGCGCACTGAGGGTGACAGCCCACCTCCTCAGTTAGTTGATCCGAAGCAAATGGATTTCCAGCCCAGCGAGTGTCGTTGCGTCTCACAAACTAGCACAGTTTCTCCAACACGAACATCGCTGCTGCAAGCCATGCCGGCGGTGAAATGGCGCTGTTTCATGGCTGGAACCAGGATTAAATTTCCAGATGAAGACGCTTGGACTTGGAGAACAGTGGACGACATTGAGATGAAGGACGTCTCAGAAGACATGTTTCAAGATGGGCTTCGAGTGGTTGATTACGAGAGGATCAACACCAAGTACAATGGAAACACCGACGAATTCATTATGTCTTTTAAATCATGCAACAATAAGCAAACAAGCCTTCAGGCTGAGATTACAGCTGACCACCCGTTCTTTGTCAAGGAAGCAGCCTGTTGGGCCTCCTTAAACCCTGCCGCTACCGAACTGCATTATGGGATATGCTGTCAGCCATTGCAGCGGGGTGATGTTTGTCTGTTGCCGTATGATCCGGATGCTGTAGCGTGTTGTAACGGAACGCAATGGGATGGCGATAACTCATCTGAATTCAATGATATGTCAAACGCGGCACTCACCCTGAGCAGCATGGCCAAGGATAAAGAGGAGCACAGCCACCGGCGCACCAAGCTTCTTTCCGAGTCTCACTGTCCTCCCAGTCGATTGAAAAGAAACGGCACTCATCAGTTCACCAAGAGGCCCATGAATGCCTTTATGCTGTTTGCCCAACGCTTTAGACTGGAAATCACCCAGGCTCACCCCGGTAAGGACAACAGAGCAATCAGTGTTATCCTTGGAGACAAGTGGAAGGCCATGAAACAAGAGGAAAGGAGAGAGTACGTGATTCGAGCCAAACTTTTGGCGGATGAGCACAAACGAGTTAATCCAGACTGctggaaaagaaagagaaactCTGAGaagagACCAAGAAAACGCGCCCCTAGGATATGGTTTGTAAaagctgccatcttggattgccCAAGCCAAGACCTAGGGAACGACGTTGTGGTCAGGTCTATAAGCGGCACCGGGTAGTTTTGGTGAAAAAGGACGCCTTTGAATAAACAATGGCCATCGGAAAACAATTTCCTTCATCAAAATGTGGTTCCCAGTGGCTATTCAGTATAATTAGGCGGCAAATCAGCCGAACTTTGTTGGATTACCTCTAATATAGTATTGACATGCAATATGTGTATAAAAAGTAACTTAGAAGATCTATATTTATGATTTCAGTTTTCATAATTTCGCCGGCCAGTTGTTCAATATAAAGGACATTGCCTGAATAACAAATGCCAAACcttttatttgaaattaaaTATTCTTCAAATTAATgaggaaggggggaggggggcgcaatgggggggggggggagtccaGAGCTTTTGTGTTCTAACATTTCAGCAATACATAGAATACAATGTAACCTAGGAATAGTGCATAATTCGGTCATCTAATCCATAACATTGTGTTGTGATCTCAGATGACCGAAAACAAAAAATCTTCACATCGTCTGGCTTCAACTTCGGTACAACGTCAAATTAAACGTCCGTATACCATGGGGGATTTCATGATGTACTTCGTTGATGATTAGAGTCTTAGTTTGCTTTTAGCCAGTTCATTTCTGTTTTCGATATTTGCTTTCAGATGTTCGCTTGGCTCTCACTCATCTCCTCCCCACAGCGCTCATCTGCACGGAGATGTATTCTTGAACTTCCgcgtccccccccccacccccccacatAACTTCAGCCTAAGTTGGGGAATTTGGAATTGACTAGAGTCAGTGAGATATTACTGTATATATACGAAATGCGTTTTGATCAAATTCAATACAGGCACGCAACACGTGCAGAGAGCTGTTGAACAAGGGGCCACTCAATATTACCAGAAACCCACAAGGGGTTTGATAGTACCTGGT

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00505 all species →	HMG_box	HMG (high mobility group) box	Domain	Interproscan
PF08517 all species →	AXH	Ataxin-1 and HBP1 module (AXH)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013087 all species →	Domain	Zinc finger C2H2-type	Interproscan
IPR003652 all species →	Domain	Ataxin, AXH domain	Interproscan
IPR039655 all species →	Family	HMG box-containing protein 1	Interproscan
IPR009071 all species →	Domain	High mobility group box domain	Interproscan
IPR036236 all species →	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan
IPR036096 all species →	Homologous_superfamily	Ataxin, AXH domain superfamily	Interproscan
IPR036910 all species →	Homologous_superfamily	High mobility group box domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15499 all species →	HMG BOX-CONTAINING PROTEIN 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10766	ALKBH4; DNA N6-methyl adenine demethylase	EC:1.14.11.51	Enzymes with EC numbers	-	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.