Gene detail

Detailed information of ENSTHXP00000041392.1 in Siderastrea radians

Genomic Location: chr13:32736499...32739376
NR annotation: no NCBI-NR hit recorded
Species Siderastrea radians · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ENSTHXT00000062753

atggcggctgtAGAGTCGTTGAAGGGCAAGTCAATTGAAACTGTAAAACTCAGCTACTCGCCTTCATATCCCGGCGCTATATCATGGTCTCCCGATGGCCGAATATCAGTGATCACTGATCAATGCGTTTATGTTCTTACACCAATTTCTTCTCCAAAGCACGCCGgtttaaatttggaaaggaCCTCCATTCCTCGCCACAAGAATGTGTTGCTCTTGGATGTTGGCATCGATCGCAAGGAAATGACTGACAATAAATCTTCTGAGTTGGATCCTAAAGTTAATACTTCACTACCTATTTCAAGTGGTTTTCAAATGGTTGCATGGTCGCCCCTGAATTGTGACAAAAATGGCAGATGTGTTATTGCAACTCTCTTTTCAGATTATCAGCTTTTTGTCCACGTGCCTCCAACACTGGGCACCAGGTGGAAGCAAGCTTTTGACCTGTCTCATGAACTATGCAAATATCTTACAAAGAACAGCTTCAAGATTGACCAGGATATAATGCAATCAGGTGTGAGTCAACCAAACAAGATTATCGACGCTAATGACATGTCTGGTAACAGGAAATATTTCCGGTTTCTCCAGCGAACACAAAATCTTGCATTCACTTCTCTGCATTGGTTTTCTGAAATTTACCATAGTGGAGGAGATCTGTGTTCTGCTGAACTGGATAGCTTAGTTAAAAACGATCAGTTTGCAATATTGATAACAGGCAACCAAAGTGGTCACGTAatcttttggaaagtggctGTACCCATGAGAATCACTAACTCTCAAGGTGTTGAGCTTGGAGGATTTCTTGATACACAGCAATCATGGCCTTGTTCTCTGTCATGGCAAAGACTTACAAGTGAGCAAGGACTGTTGGCTGTGGGTAGTACTGATGGATATGTGAAGCTTTTCAGTGTCAAAGTATTACCTTCAATCACTGGAGTAGCTCAGTATGTCCTGTGGGGAGACAAGGATGACATGCAAGTGCAGTGGCTAGAATGGCTGCCATCAACCCAGGTCAATCACAGTGGATATCAACTTGTAGCATGCAAAGGATCGTCTGTCATAATGTTTTCAATGTCTGTGAAGGATGGTGTTTTGATTCAAAAGCCAACCCAAAGGATAGTAACAGAAGTTCACAGAATGCCTATCACTGGTTTGGCTTGTGCAGGCAATGGGACTGTCTTTACCTGCAGCAGAGAGGGTTCAATCCAGATGTTAGCAGGCGAGGGGACACCGACACGATCAGTAGATTATGACGCCAAAAAAGGCTTCCTGTGCAGTGGTATAGGCGTATCTGCTAATGCTGCCTTCATTACATTGTTTCTATCCCCCTCTAATTACACACAGCAGTCTATGGAATCACATCAGACTCACATAGTTTTCATAAACATTGCCTGTGGGTCAGCAGCAATCGCTCAACTGCTCAACAGCAAATACCTTGTAATCGAGAATAAGTGGGATGTTTGCCAAGCCCTCCAACACTTCATTcatcacaacaaaaacatgaCAGAAGAGATTCAGCCTAAACTGATGTCTCCTGAAGATTTGGAAACATTTTCTTATCCTCAGTTGATTTTGAGACACCATTTGCTTTCTCTGTTGGTCTTGATTGCAAGGAATGATCAGCAGGACTCGAACAGGTCACAGCTAACGGAATGGTCGGCTCAGCTTGAATGTACAGTAAATtacatgtacaaacacttgGCTACTGCAACATTGAAAAGTTGGTTGGAAGGAAAAGAATTAGGGAGTGTGAGTCACTCAGATTCCATGTCAGCTTTGTTACTATGCAACTGGTTAGTAACGAAGTATGGTGGTCCTACTGTGGTTGATTTGGTAACTAAGGTTTACCAAGCCTGTGGTGATTCTAAAGGCCTAAACAGGGTTTTATCACTTCAAGAGCAAAGAAATGTAATTTTTGAGCACGCTTCCTCATCAAGGAGTGCTGAGATGGTCAACGTCCCAGTGATAGAGAAATGCCCATTATGTGAGGGTGATATTCCTTTGGAAAGCTTAACCTTTGGAACTTGTTTAAATGGACACAAGTGGCCACGTTGCTGTGTACTGTTTACCATTTGTGGTGATGCAGCAAACAAATGTTTGATAGCTGGAACGTGCTCAGTACGTGTATTTTCACAGCTCCAACTGAACTTTAAGGCTTGCAGGTTCATTTTCTTGTTGGTTgaatacagttga

Transcript

ENSTHXT00000062753

Protein

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005269 (this species only) · gene tree & orthology
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12657 all species →	TFIIIC_delta	Transcription factor IIIC subunit delta bet-propeller domain	Repeat	Interproscan
PF12660 all species →	zf-TFIIIC	Putative zinc-finger of transcription factor IIIC complex	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR024761 all species →	Domain	Transcription factor IIIC, 90kDa subunit, N-terminal	Interproscan
IPR024764 all species →	Domain	Transcription factor IIIC, putative zinc-finger	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR044230 all species →	Family	General transcription factor 3C polypeptide 4	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15496 all species →	GENERAL TRANSCRIPTION FACTOR 3C POLYPEPTIDE 4 FAMILY	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0000127 all species →	Cellular Component	transcription factor TFIIIC complex	Interproscan
GO:0004402 all species →	Molecular Function	histone acetyltransferase activity	Interproscan
GO:0006384 all species →	Biological Process	transcription initiation at RNA polymerase III promoter	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSTHXP00000041392.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.