Gene detail

Detailed information of ENSTHXP00000055088.1 in Siderastrea radians

Genomic Location: not available for this species
NR annotation: no NCBI-NR hit recorded
Species Siderastrea radians · all data for this species · gene families

Sequence

CDS

Transcript

ENSTHXT00000083949

GACAACACGTGAAGTTTGGAGAATTTCGAACTGGAAAATAGAGCGCGATTCTTTTgcgcaaaacaaaaacattactAAATCATGTTTAGCTAGCGCTGTGTAAGACTCGATCTAACATGGACGACTGGCAAACTTGCCCGAGATGTAAGACAACCAAGTACCGGAATCCTAAGTTAAAGCTCTTGGTAAATGTTTGTGGTCACAAATTGTGTGAAAACTGTGTGGAGACCCTTTTCACCAGGCCCTCAGCAGCTTGTCCTGAGTGTAATACAGCACTGAGACGAAATGACTTCAGGATCCAACAGTTTGAAGATCTGATAGTTGAGAAGGAGGTGGATATCAGGAAAAAGATCTTGAAAATCTACAACAAGCTTGAAGAAGACTTCCAGTCAGAACAAGATCCACTAAGAGCTTACAATGACTATCTGGAAGAAGTAGAGACTATAATATGGAATCTTGCAAATGGACAGGAGGTTGAGGAGACAAAGAAACAGATCGACAAATACAAAAAAGACAATGAAACTCTTattagaaaaaataattttaagctGGGCAGAGAGGAAGCTTTGGTTACATCCAAAATtgaagaagaacaaaaacagGCTGAGCTTCGCCGAGCACAGGCAGCTTTGTTGGAAAAGCAAGAGAAAAATGACAGGCAAAAAGAGAATGAAGAATTTCTTGACAGTCTGACCAAAGGAGATCGTCCTCTGGAAGATATTATAGCTGAGCATACAAGCAAACTGCAGAAGAAGTCTTTGTTGTTCTCAGGAAGCAACACTCAACTGTCTTCATTGCAAAAGTCTCAGGAGACCTTTGCTCCATTGCCATCCACCGAGGGTCCCATGTTTGTTTATGTGGCTCCTGAAGTGGCTAATGATGGACCAGCCGCCCCTGACATGGAGGTCCTAGCTGCAAGAGGGTACCTGAGGCATGTACGAACCGCTACAGAGGGTGAAAAAGCCGGCGGATATTCGTCTGAGCTGGCCTGTGGGAGGGCGATACAAGAGGCTTTCTCGGCACTCTACTTCGGCGTTGAGCTGTAGTTCAGTATTTCACGACAAAAAATCTTTCTGCGGGATCTTGAAGTTTACGTCGTTGCATACATTGTATGCGCAAGTGTTGAATGATGGCGTTTGTATTTGTGAACCACATTATCTGAAGTGACCAGCTTTATGTACAGGAAAGTTTAGCTGGGTAGCTGTcattgaaatgacaagtcttcaAGATGTTATCACAGACATTCAGGTTGGGAGAaaacaaatcactgcaaaaACGGTGTCacaaggaaagtactgctccgtACCTCTCACCGGTGTATATCTTGCGTGGATGGAAACTTCCCCCGTGCAGTGGAATCAGACATGGATTGGTGACCAAATATCCGGAGGGGTACTCAACAGATGCTCGAGTAGGGAGGTGTGGCTCGAGTGCTAACCCAGACCCTGACTGCTgtttttgctaccctgtttgaGATAGAACTTAGATTTTGTCAGAGCTTCTCTAAGACGTTTATTTTAACCAAGATAATACCCTGTTTTAGACTGGAATGGATAAACTGTTTTCTATTTTAATACTTTGACAATTAAAAATCTATTTACAGCTTTAAAGGGTGACTGAACTGTTTGCGGTGATAACATATACCTTAccatgtttaggacaaaaagtGATGAAATCAATACGCTAATTAGACGAGGCTTGAAACTCCTAGAGATGTGCGGTTCgatattttttttcaccaaaTAACGTGGTACAGCTTCCCAGAGAATCTTGAACAAAAACCGTCATGAAAGCCTATGTACGTATGACTGATAATTAAATTGTTGGGTATTTTATTCCATTTAGAGTCATTTTGTTACTTCCTACTTAGTATGGAACATTTCAATGATTGCGATTTTGAGGATAATCGTGCAATCCTACATGGCGTCATTGCATGTTTTAGGTAATCATAATCGATACGCCACAGCCCCTTCTACAGAATATACCAGTTTATCCACTACAACTACAGTCAAATCTTGTTTATCCGGACCTTGATTGTTCACATT

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17121 all species →	zf-C3HC4_5	Zinc finger, C3HC4 type (RING finger)	Domain	Interproscan
PF06391 all species →	MAT1	CDK-activating kinase assembly factor MAT1	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan
IPR017907 all species →	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR004575 all species →	Family	Cdk-activating kinase assembly factor MAT1/Tfb3	Interproscan
IPR015877 all species →	Domain	Cdk-activating kinase assembly factor MAT1, centre	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12683 all species →	CDK-ACTIVATING KINASE ASSEMBLY FACTOR MAT1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000079 all species →	Biological Process	regulation of cyclin-dependent protein serine/threonine kinase activity	Interproscan
GO:0005675 all species →	Cellular Component	transcription factor TFIIH holo complex	Interproscan
GO:0006281 all species →	Biological Process	DNA repair	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0006289 all species →	Biological Process	nucleotide-excision repair	Interproscan
GO:0045737 all species →	Biological Process	positive regulation of cyclin-dependent protein serine/threonine kinase activity	Interproscan
GO:0061575 all species →	Molecular Function	cyclin-dependent protein serine/threonine kinase activator activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10842	MNAT1; CDK-activating kinase assembly factor MAT1	-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.