Gene detail

Detailed information of ENSTHXP00000062811.1 in Siderastrea radians

Genomic Location: not available for this species
NR annotation: no NCBI-NR hit recorded
Species Siderastrea radians · all data for this species · gene families

Sequence

CDS

Transcript

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16573 all species →	CLP1_N	N-terminal beta-sandwich domain of polyadenylation factor	Family	Interproscan
PF16575 all species →	CLP1_P	mRNA cleavage and polyadenylation factor CLP1 P-loop	Domain	Interproscan
PF06807 all species →	Clp1	Pre-mRNA cleavage complex II protein Clp1	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR038238 all species →	Homologous_superfamily	Clp1, C-terminal domain superfamily	Interproscan
IPR045116 all species →	Family	Polyribonucleotide 5-hydroxyl-kinase Clp1/Grc3	Interproscan
IPR032324 all species →	Domain	Clp1, N-terminal beta-sandwich domain	Interproscan
IPR032319 all species →	Domain	Polyribonucleotide 5'-hydroxyl-kinase Clp1, P-loop domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR038239 all species →	Homologous_superfamily	Clp1, N-terminal beta-sandwich domain superfamily	Interproscan
IPR010655 all species →	Domain	Pre-mRNA cleavage complex subunit Clp1, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12755 all species →	CLEAVAGE/POLYADENYLATION FACTOR IA SUBUNIT CLP1P	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006378 all species →	Biological Process	obsolete mRNA polyadenylation	Interproscan
GO:0006388 all species →	Biological Process	tRNA splicing, via endonucleolytic cleavage and ligation	Interproscan
GO:0006396 all species →	Biological Process	RNA processing	Interproscan
GO:0051731 all species →	Molecular Function	polynucleotide 5'-hydroxyl-kinase activity	Interproscan
GO:0031124 all species →	Biological Process	mRNA 3'-end processing	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSTHXP00000062811.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.