Gene detail

Detailed information of ENSTHXP00000065772.1 in Siderastrea radians

Genomic Location: chr4:7543780...7552912
NR annotation: no NCBI-NR hit recorded
Species Siderastrea radians · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

ENSTHXT00000099676

CTACCAAGTTATCTTCGAGCCTGCAGATGCCTTGGTCATCTACCTTCATCAGCAAATTATGCGTGACGCAACGTAAACAAGGCACAATTTTGTcgacaattttatttttccgaCGAATGTACTTGAATGATGTCATGAATTTATGGTAAAATTTGCAAAGGATTTTGCAAAAATCAGCCGATTTCTGCTGGTGTAAGGGGAGGAATTTATTCCAGTATATCTTGGGAAACAGAGTTATGTTGGATCTGGAGGTTGTCCCTGAAAGATCGCTAGGAAACGAACAATGGGAATTTATACTGGGAATGCCTGTAGCACAGTGCGTGCAGATTCTTAAGCGACAATGTCGTGTAATCAAATCTGTGCAAGCAATGTACAGCGAGGCGAACCCTCTCGCCATGGATCTGGTTTTAAATCTTCCAAATGATGGAATAAGACTTGTCTTTGATCCTGTGTCACAGAGGCTGAAGATCATTGAAGTTTACAGTATGAACAAAGTCAAGCTGAAATACTGTGGAGTGCACTTTAATTCTCCTCAAGTTCAACCTACAATTGAACAAATTGACATGTCATTTGGAGCTACCCATCCTGGAGTGTATGATCCCAACCATCAGCTGTTTATTCTCAACTTTAGAGGTCTCTCATTTTCTTTCCCTATTGACTCAAAGTTTGAGCCTTACTATACTCATGGATTGGGATCACTAAAGTTCTCCTCTGGATCATCACCGGTTGTGTCACGGATGTCAATTTACCATGGCAACAGCTTGACAGATGCAAGGGCACCACCGCTCCCTCTTCAGTGTTTCCATGGTAACTGCTATGCTGACAGTATTGAGATCATTAATAAAGATGGGAAAGTTTATGGTTTCAAGTGTTTCCTTGTTGCTGAAGgAACTGGTCCTGGTAAAATCTTAGAACTAAGAAGACGGACATTTGAAAGAACTGTCATGTTCGGAGATTCATGCCAGGATGTGATAAGTTCCCTTGGGTCACCATGTAAAGTTTTTTACAAAGCTGAAGACAAGATGCGCATCCATTCTCCATCTCCACACAAACTTGCTCAGTCCAAGAGTTCTGACTacttctttaattacttcactCTAGGAATTgatatTTTGTTTGATGCTTACAGTCATTTGGTCAAGAAATTCATTCTTCACACAAACTTCCCTGGGCACTACAACTTCAACATATACCAGCGCTGTGAATTCAAGATTGGGATACAGAGAGACTCAAAAGATTCAGTTCTTGACGAAGGCACACCATTTATTCTGACTCCTTGCACAAAGTGGGACAGTGTCCAGGATTATCTGGGTAAACCAGTGGAGGCGCCTGTTGTATTGAATAGATCTTCTTCCACTAACACCACCAACCCATTTGGTTCCACCTTCTGCTATAACTTGCAGCACATGATATTTGAGGTGATGGCTAACAACCATCTGGCTTCCGTGACCTTGTATCCCCACAGCAACAGCTCTCTTACATCGTGAAACCCGCAGTTGATTGGTGTGCGTGATCACGCACTGATCACATGAAGCTCGCGTGACTCGCAAAGCGACGTAGTTACTAGTAAAAAACAGATGCATATGTAGTTACGAGTTTTTTTGGTGTGTAGTTATGTTTTAGTTAAGAAAGGGAAAGCAGATTTCATGTGTTTTTATTTACCATCTTTTTCAGTCTTAAAAGTTAGCTCGTTGCTGTTGGTTTTACCTATTTGTCAGATTAAATCCTGGAAATTCcttcttatttattttttgtcagGTTGCTGCATTTCATTTTTAAGACTTTTAACACCATTGCGATGTATACGCGACCTAGACCCGCGAATCTAGCCAGGAATTTATCATATGGGGGATTCTCTTATACCTTCAGCCAGATTTACGGGGGGCAGTAGGAGAAACTTGTATATTGCATCAGGGCTTGAAGAGTTAATAATAGTGATATTTAAATCGGCTTTCAGTTTCAGTAATGCCGATTATTATCGTTTCTCGAGTGGTGTGGCTTATGAGAACAGTTAACCTCTGAAAAACGGATAGCCTTAGTTTATAGAATTACTgtatttaaaatgattttaccatttgtttttgaagaacaatgtcaaataaaataagaatatttaaaaataaatgaatgttCCATGTCGTTTGacttcaaaataaaaacaagcgTTACTTCTCCACGTGTTCGTCAGGCTCAGTTTAGTCTTCAACAAGGGCGGATCGATTGATAGAGATGACAGTTCGCTTCACGACTTGGTATTACTAAAAATATCCACCGCTATTCACTTGCAcctcggtgaataattgttgaTTATTTTCTTTTCGCTGTAACTTAGAACGAGGTAAatgcaattttaatttcttctcgttaccaggcattaaactgTCTTTTAATTACATCTGTGATGAGCCCTCATTGGTT

Protein

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009207 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03676 all species →	PHAF1	Phagosome assembly factor 1	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005373 all species →	Family	Phagosome assembly factor 1	Interproscan
IPR039156 all species →	Family	PHAF1/Protein broad-minded	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13465 all species →	UPF0183 PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005802 all species →	Cellular Component	trans-Golgi network	Interproscan
GO:0043001 all species →	Biological Process	Golgi to plasma membrane protein transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K27411	PHAF1; phagosome assembly factor 1	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.