Gene detail

Detailed information of ENSTHXP00000068016.1 in Siderastrea radians

Genomic Location: chr4:49487415...49509399
NR annotation: no NCBI-NR hit recorded
Species Siderastrea radians · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ENSTHXT00000102308

ATGAAGCGATCAAAAAAGCAGAGGCATAACTTACATAGATTTTGCACCCAAAAGATGGCAGATGATGCAGTAGTTCCACACTTTTCCAGGTTTCTTCACGATGATCCTTACATCAAACCTTATCAGACTGAGATAGAGAGAAGGTATAAGGTATTTTGTGGGCTTAAGAAACAGATAGAGGACAATGAAGGTGGCTTGGAGAGGTTTTCAAGAGGCTATGAAAGATTTGGAATCAACAGGACATACGAGGGTGTAACGTACAGAGAATGGGCCCCAGCAGCAAAGGGAGTCTACCTTACAGGAGACTTCAATGGCTGGTCAAGGACATCTCACGCTTGCACCAGAAATGAATTTGGGGTCTGGGAACTAACCATACCTTATAAGGCTGATGGCTCATCCCCAATCCCCCATGGATCAAAAGTTAAGGTTTCAATCCAGCTTGAGAATGGTGATTTAGTTGACCGTATTTCTCCATGGATTCGTTATGCTGTCTGCCCCAAAGATGATATCCTGTATGAAGGAGTCCACTGGGATCCACCACAGCCTTACCAATGGCAGCACAGTAAACCCAAGAAAACCTCTGGGTTACGTATTTATGAATCTCATGTTGGCATAGCCTCGACAGAGGGAAAAGTAGCTAGTTACAAGGAGTTTGCCTATAATGTTGTTCCAAGGATAAAGAAGCAAGGATACAATTGCATACAGCTCATGGCAGTCATGGAACATGCTTACTATGCATGCTTTGGGTACCAAGTTACAAACTTCTTTGCGGCCTCCAGCCGTTATGGAACACCTGACGAGTTGAAGGAGCTGATTGATGTGGCTCATGGGCATGGAATTCTAGTTCTGTTGGATGTGGTGCACAGTCATGCAGCTAAGAATGTGATGGATGGATTGAATGAATTTGATGGCTCACAAAGCTGCTATTTTCATGGCGGTGGACGGGGATTTCACACACTTTGGGACAGCCGACTGTTTGATTATACCAAGTGGGAAGTGCTACGATTCCTTCTATCAAATCTTCGATGGTACATGGAGTATTATCAGTTTGATGGCTTCCGGTTTGATGGCGTGACATCAATGTTATACCACGACCATGGTCTTGGACATGGCTTTGGTGGAGACTATCCTGATTATTTTGGACTTGGGGTTGATACTGAATCACTTGTCTACCTCATGTTAGCCAATGACATGCTGCATACCATTTATCCTGATGTTATCACCATTGCAGAGGAAGTGTCAGGAATGCCAGGCTTGTGTCGGCCAATCAGTGAAGGAGGAACAGGATTTGACTATCGCCTTGGCATGGCTGTGCCCGATTTATGGATCAAGGTCCTCAAAGAACTCAAAGATGAAGAATGGCGTATGTGGGACATTGTGTGGACTCTAGTCAATCGCCGACACAACGAGAAAACGATCACGTATGCCGAGTCTCATGACCAGGCCCTTGTCGGTGACAAGACCATTGCATTCTGGTTAATGGACAAGGAGATGTATTGGTTCATGTCTGAAACAACCCCGCTGACGCCCATTATTGAGAGAGGACTGGCACTACACAAGATGATTAGACTGGTCACCTGTGGTCTTGGAGGTGAAGGCTACCTCAATTTCATCGGTAATGAATTTGGACATCCAGAATGGCTGGACTTTCCTAGAGCAGGGAACAATATCAGCTATCATTACGCTCGTCGGCAATGGAATCTTGTGGATGACCACTTGCTAAGATACAGATATCTAAACGAGTTTGACCGGGCTATGATGCACCTTGAGGAGAAATATCATTGGCTGGAGTCACCTCAGGCCTACGTTAGCTTGCACCACGAAGATGATAAAATGATTGTGTTTGAAAGAGGCACGCTGATATGGGTGTTCAACTTCCACACACACAAGAGTTTTGCGGACTACAGGATTGGTGCCAGTATCGCTGGAAAATACAAATTAGTTTTGGATTCAGATGCCCCTGCCTTTGGCGGTCACAGTCGGCTAGATGCAAACTGTGAATACTTTGTAGATAGTCAACCCTGGCATGACAGATCGTTTTCTCTGTTGGTGTACATTCCCTGTCGCACCGCATTGATTCTAGCACCGGCGTAA

Transcript

ENSTHXT00000102308

ACTAACAATGACTACTgaggttttttcctttttttttaactctcttttcctACATTTCAAATgattccaaaaagaaagaaactgttACCAAAATTGATCGAAATTTTGCTAAAAAGGGCGGGAACCTCCCATGCAAAAAAGCTCGAGGGGCGGAAGGCCAGGCTACCTATTCACTCGAAGGACACAGGTCTAGGCCTGCAATATGGCGTCTTGTGTATTGTGATTCCTCGTGTCTTGGAAATGTCTGCCGGACACATGGCGGCCAAAAAGatTACTGCCCATTCTGGGATTAATGGAGAATGAAGCGATCAAAAAAGCAGAGGCATAACTTACATAGATTTTGCACCCAAAAGATGGCAGATGATGCAGTAGTTCCACACTTTTCCAGGTTTCTTCACGATGATCCTTACATCAAACCTTATCAGACTGAGATAGAGAGAAGGTATAAGGTATTTTGTGGGCTTAAGAAACAGATAGAGGACAATGAAGGTGGCTTGGAGAGGTTTTCAAGAGGCTATGAAAGATTTGGAATCAACAGGACATACGAGGGTGTAACGTACAGAGAATGGGCCCCAGCAGCAAAGGGAGTCTACCTTACAGGAGACTTCAATGGCTGGTCAAGGACATCTCACGCTTGCACCAGAAATGAATTTGGGGTCTGGGAACTAACCATACCTTATAAGGCTGATGGCTCATCCCCAATCCCCCATGGATCAAAAGTTAAGGTTTCAATCCAGCTTGAGAATGGTGATTTAGTTGACCGTATTTCTCCATGGATTCGTTATGCTGTCTGCCCCAAAGATGATATCCTGTATGAAGGAGTCCACTGGGATCCACCACAGCCTTACCAATGGCAGCACAGTAAACCCAAGAAAACCTCTGGGTTACGTATTTATGAATCTCATGTTGGCATAGCCTCGACAGAGGGAAAAGTAGCTAGTTACAAGGAGTTTGCCTATAATGTTGTTCCAAGGATAAAGAAGCAAGGATACAATTGCATACAGCTCATGGCAGTCATGGAACATGCTTACTATGCATGCTTTGGGTACCAAGTTACAAACTTCTTTGCGGCCTCCAGCCGTTATGGAACACCTGACGAGTTGAAGGAGCTGATTGATGTGGCTCATGGGCATGGAATTCTAGTTCTGTTGGATGTGGTGCACAGTCATGCAGCTAAGAATGTGATGGATGGATTGAATGAATTTGATGGCTCACAAAGCTGCTATTTTCATGGCGGTGGACGGGGATTTCACACACTTTGGGACAGCCGACTGTTTGATTATACCAAGTGGGAAGTGCTACGATTCCTTCTATCAAATCTTCGATGGTACATGGAGTATTATCAGTTTGATGGCTTCCGGTTTGATGGCGTGACATCAATGTTATACCACGACCATGGTCTTGGACATGGCTTTGGTGGAGACTATCCTGATTATTTTGGACTTGGGGTTGATACTGAATCACTTGTCTACCTCATGTTAGCCAATGACATGCTGCATACCATTTATCCTGATGTTATCACCATTGCAGAGGAAGTGTCAGGAATGCCAGGCTTGTGTCGGCCAATCAGTGAAGGAGGAACAGGATTTGACTATCGCCTTGGCATGGCTGTGCCCGATTTATGGATCAAGGTCCTCAAAGAACTCAAAGATGAAGAATGGCGTATGTGGGACATTGTGTGGACTCTAGTCAATCGCCGACACAACGAGAAAACGATCACGTATGCCGAGTCTCATGACCAGGCCCTTGTCGGTGACAAGACCATTGCATTCTGGTTAATGGACAAGGAGATGTATTGGTTCATGTCTGAAACAACCCCGCTGACGCCCATTATTGAGAGAGGACTGGCACTACACAAGATGATTAGACTGGTCACCTGTGGTCTTGGAGGTGAAGGCTACCTCAATTTCATCGGTAATGAATTTGGACATCCAGAATGGCTGGACTTTCCTAGAGCAGGGAACAATATCAGCTATCATTACGCTCGTCGGCAATGGAATCTTGTGGATGACCACTTGCTAAGATACAGATATCTAAACGAGTTTGACCGGGCTATGATGCACCTTGAGGAGAAATATCATTGGCTGGAGTCACCTCAGGCCTACGTTAGCTTGCACCACGAAGATGATAAAATGATTGTGTTTGAAAGAGGCACGCTGATATGGGTGTTCAACTTCCACACACACAAGAGTTTTGCGGACTACAGGATTGGTGCCAGTATCGCTGGAAAATACAAATTAGTTTTGGATTCAGATGCCCCTGCCTTTGGCGGTCACAGTCGGCTAGATGCAAACTGTGAATACTTTGTAGATAGTCAACCCTGGCATGACAGATCGTTTTCTCTGTTGGTGTACATTCCCTGTCGCACCGCATTGATTCTAGCACCGGCGTAAAACCCACTTCTTGTTGGACTCTTTGTTTCTACAGTCTGGGAATTCCTGTTATATCACTTATAATTTACCCGTAGTTTTAAATTTCAGGTCACAGTTTTATAATAGAATGCGAGGTCAAGACATTCTTGAAAGATGTTTCTTATTTGAATACTGATTTATCGTAAACGCATTGTAAGTAGATAGAAATTTTACTTGTTAGACAATGTTAAGGGTGCAATATATAGAGCTTAGATATGAATTTGTGTTCGACCACGGTTGAACTCAATATCAGTGAATTTCGGAATTCCGAATCAGGGTTGGTTGTATGGGGAATGCAAGAAATTCCTACCTCCATACAAAAACCTTTCCAAAAGTTCGAAAATCAAAGACGTGTATTTCCGCATCTAAGATAGGTACAACATTCAACTTTACCATTTTGAGAATTCAATGTGATCTCTTTCCAGGAGTATCGATAGATTTTCTGTCCAAGCCGAAATTCTATACgtatt

Protein

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003460 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00128 all species →	Alpha-amylase	Alpha amylase, catalytic domain	Domain	Interproscan
PF02806 all species →	Alpha-amylase_C	Alpha amylase, C-terminal all-beta domain	Domain	Interproscan
PF02922 all species →	CBM_48	Carbohydrate-binding module 48 (Isoamylase N-terminal domain)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006047 all species →	Domain	Glycosyl hydrolase, family 13, catalytic domain	Interproscan
IPR006048 all species →	Domain	Alpha-amylase/branching enzyme, C-terminal all beta	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR014756 all species →	Homologous_superfamily	Immunoglobulin E-set	Interproscan
IPR013780 all species →	Homologous_superfamily	Glycosyl hydrolase, all-beta	Interproscan
IPR004193 all species →	Domain	Glycoside hydrolase, family 13, N-terminal	Interproscan
IPR037439 all species →	Family	1,4-alpha-glucan-branching enzyme	Interproscan
IPR017853 all species →	Homologous_superfamily	Glycoside hydrolase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43651 all species →	1,4-ALPHA-GLUCAN-BRANCHING ENZYME	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005975 all species →	Biological Process	carbohydrate metabolic process	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0043169 all species →	Molecular Function	cation binding	Interproscan
GO:0004553 all species →	Molecular Function	hydrolase activity, hydrolyzing O-glycosyl compounds	Interproscan
GO:0003844 all species →	Molecular Function	1,4-alpha-glucan branching enzyme activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005978 all species →	Biological Process	glycogen biosynthetic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00700	GBE1, glgB; 1,4-alpha-glucan branching enzyme	EC:2.4.1.18	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Siderastrea radians tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Siderastrea radians, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →