Genomic Location: BLFP01000185.1:1684554...1704035
NR annotation: XP_029206387.2, rRNA N6-adenosine-methyltransferase ZCCHC4-like [Acropora millepora]
Species Montipora efflorescens · all data for this species · gene families
| CDS |
| ENSTIFT00000001869 |
| Transcript |
| ENSTIFT00000001869 |
| Protein |
| ENSTIFP00000001741.1 |
| UniProt accession | Description |
|---|---|
| Q9H5U6 | rRNA N(6)-adenosine-methyltransferase ZCCHC4 OS=Homo sapiens OX=9606 GN=ZCCHC4 PE=1 SV=3 |
| D3ZV31 | rRNA N(6)-adenosine-methyltransferase ZCCHC4 OS=Rattus norvegicus OX=10116 GN=Zcchc4 PE=3 SV=1 |
| Q8BKW4 | rRNA N(6)-adenosine-methyltransferase ZCCHC4 OS=Mus musculus OX=10090 GN=Zcchc4 PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0005309 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF10237 all species → | N6-adenineMlase | Probable N6-adenine methyltransferase | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR037275 all species → | Homologous_superfamily | Zinc finger, CTCHY-type superfamily | Interproscan |
| IPR039846 all species → | Family | Zinc finger CCHC domain-containing protein 4 | Interproscan |
| IPR017921 all species → | Domain | Zinc finger, CTCHY-type | Interproscan |
| IPR001878 all species → | Domain | Zinc finger, CCHC-type | Interproscan |
| IPR010666 all species → | Domain | Zinc finger, GRF-type | Interproscan |
| IPR041370 all species → | Family | Methyltransferase EEF1AKMT1/ZCCHC4 | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR13493 all species → | ZINC FINGER CCHC DOMAIN-CONTAINING | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005730 all species → | Cellular Component | nucleolus | Interproscan |
| GO:0005737 all species → | Cellular Component | cytoplasm | Interproscan |
| GO:0008988 all species → | Molecular Function | rRNA (adenine-N6-)-methyltransferase activity | Interproscan |
| GO:0031167 all species → | Biological Process | rRNA methylation | Interproscan |
| GO:0003676 all species → | Molecular Function | nucleic acid binding | Interproscan |
| GO:0008270 all species → | Molecular Function | zinc ion binding | Interproscan |
| GO:0008168 all species → | Molecular Function | methyltransferase activity | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K25177 | ZCCHC4; rRNA N6-adenosine-methyltransferase ZCCHC4 | EC:2.1.1.- | Ribosome biogenesis | ko03009 | deepkoala |
Genes whose expression across the transcriptome samples of Montipora efflorescens tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Montipora efflorescens, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |