Gene detail

Detailed information of ENSTIFP00000003222.1 in Montipora efflorescens

Genomic Location: not available for this species
NR annotation: XP_029198484.2, DNA-directed RNA polymerase, mitochondrial-like [Acropora millepora]
Species abbreviation MEFFL · all data for this species · gene families

Sequence

CDS

ENSTIFT00000003466

ATGCATCCATTGCAAGAAGTACCAGGCCTAACGTTTTCCTTTTGTCTTTATATTTTAGAATGGAGCACATTTCAAAGTGACTTTCAGGGATCAAGATTTAGTAGATTCCCTCCAACAAACCTTTTTGGCACAAAAGCTTCCCTCAATCAAAATGTTACTACACCAGTGTCTAAAGTTGTGCCTCCAATAGAAAAAGGAAAGTTGACATCAGGCTCCAAGAAGAAAAGTAGAAGTGCAAAGAAGAGTAAAACAGTCAAAAAGGACAAGAATCAGAAGGACAAAGAGAGTTCTAAAAGTAGTGAGAAAGTCACAGGGAAGACTTCTGAAATAAAACAGCATGCAGCAGACACTGGTCccagaaatgaaaacaaagattcttcttccaaaacaacaaagaatagcaaaaagcaaaagaacaaaatgaGTTCTAAAATCAGGGAGAAAGTCACAGCAAAGACACCAAAAAACAATCTGCAAACTGTAAACAGCGTTGCAAATAAATCTAAGAAGAATTCTTTTTCCAAACCTGCCATCACCCCTGTAAGGGAAACGAGTGCAACAAATAATTTAACTGAGAGATCAGTTTCCGATACAAATATAACTATAAATGCGAAAGAAGATCACCTACACCATGTACGGGAAATTAATTATTTGCACGAAACTTTGCCTGTTACTACACCTGCTAGCGCTGAGGACCACCCAATGGATTACATTCCTGAAGCACTCTACCTTGATGACGAAGTTTCTCTTCATGGAAGAGAAGAAATGACTAATGAAATTGAAGAGCCCAGCTCCTCTAATTTAGCCGATGCAAGCAAAGAATTGGAGACTGATCCTCATTTGGTTGAACCAAGAGTAAGTATTCATGAGGAAGAACTTGATGCGTTGGATGACCTCGAAAGCATTTCAGATGTGCCCTTTGAGGACTCTGTTCATATTCCCAAAAAGTTTCGTGAAGGGACTGTTGGAGGAAGACTATTTGAAGAACAGACTCTGGCTGAAATAGATGGATACCTTTACCTTGGAAAAGTAAGCTGTGAACAGTCTAAGTTGTTCAAGAGATATCTGCGAATGGGAAAGACGTTTGAAGTGCATACATTCAATAAATTGCTACATGGCTGGGCCTTTCAAGGCAACTTGATGAGCATTAAACTATTGTTTAATTTGCTTAAGAAGGAAGGACTTGAACCAGACATAGGAACATATGCTGCACTACTACATGGCTACGGCAAGTTTGATAATGTCGAAGGGATCCAAAACATCATCAAAGAAATGGAGGATAAGAAATTTGATGTCAAGCACATATTTCACCAGTGCAGCCTAAGTGAACCTCAAGCAAGAGGTGTTTTGAAAGCACTACAACTCGTCAAGCCTCATTACACTCCAGTGGTCCCAGAGTCACTAAATCAAGCCAGATACCCATCTCTTGTGAAATCATGGTATTCAGATAGGAATAATTTGGAAGCAGAACTTAAGAGTGATCCTGGAAATCTGGAAAATAAACTTGATGAATCTAAGCTAAAGGAATTTTTTGAGGAGCAGATTTCAAGAGAAGTGTCAGGTTTAACACCCATTTTGTCAGTTGAGAATGAACGAGATGCAAGTGGGGAGAACGAAAAAAGCAAGACAGTGTTTCTGGCATGTCGCAGCAAGTGGAGAAAAGCACTGATTTTGAGCATTGAGAAGGAAATGCTTGAAATCAAGAATTCCAAAGggAAATCTGTTTATCCCAGATTTGCACCTTTCATTCAAGCATTTGAGCCTGATGAGCTTGCCGACATTACCTTGGACACCATTGTGTTTTATGTGAAAGGCCGCATAGAAGGAGTTCCTTTGTATGGTGTCAGTGGCGCTTTAGGGTCTGTGCTCAACACCAAGTACATTGTGAAACACAGAATGCAGTCAGGGATGTTGGACAAGATGAAAGATGTATACCACGACTACTTTTCGTATCTCATGGACGAAAACGTTACGGCGAGGAAGATGGCACGTGAGTTCTGGAACGAGCTTGATTGCACACGCCCATTTGGTGCTTCACTGCAGCAAGAAGTTCCAAACTGGCCTTGGGCTACGAAGCTTGTGTTTGGCTGTTTCCTGGTCGACTTGTTCCTCAAATCTGCGCAACTCGATGTAAACGTCTTTAACAATAAGACGGAAGAGAAAATCCTTCCAGCATTTTACCACACCTACGAATTCAAAGTCGACAAGAAGCTAGGGGTGTTGAAACCACATCCGATTGTGTGTAGATTGTTCAAAGGCTACCTAGCAAAACAGGGTGAGATTTTCATGGAAACAACATCGGTCCCAATGTTGGTCCCACCACGACCATGGAGAGCTACCAAGGATGGCGCTTACCTTATCTTGCCAGTTGAGCTTGTTCGCAGTGCTTATGACGAAGATGGTCGATATGACAAACTGCTTGAAGAGAAAACTGATAAGGAAGATTTGGTGGCCATATTTGACTCCCTGAATTTTCTTGGATCCTGCGCCTGgagaacaaacaaaagaatcttAGACATTGCAATACGCATGTTTAACAGCGGTGGGAATGAGGATTTAGCCATACCAGGGCCTGTTGTTCAGGGAAAAATTGACCCTGAGGAACGAAAGAAACAAATTCACGAAAGAAGAATATCCAAAAAGCTTGCTCGTGAGCAGTATTCTCTGCGCATGTCATGTCTCTACAAACTCTCTGTCGCCAATCATTTTCGTGATCACGTATTTTGGCTGCCAATCAACTTGGACTTCCGAGGAAGGGTGTATCCAATCCCTCCACATTGTTCTCATGTAGGGGATGATCTGAACCGTGGAATGCTTCAGTTCGCAAAAGGTGTTCCTCTTGGAGAAAAAGGTTTGGATCGGCTTAAGATTCATCTAGTAACGCTACACGGTGCACAAAAGAAAGCGTCGTTGGATGAACGTCTGCAATATGCTAACAATCTTATGGAGGATGTGCTGGACTCTGCTAACAACCCATTGACGCCCTCAGTACCTTCTAATCTTCTTTTGAAACGTCTCTTTGTCTGCTTCTCACAGATTTGCCGTGAACAGTTCGTAAAACTTCACAGCCAACCAATATTGGAGGAGCTGCAGAAACATTTCGAGAAGAATTATGCCAACTTGAAACTTATTCGTCCATTGAAATCCAAGGGCTCTGGAGAGGAGAGAACGCATGCGTCGTTTCAAGGAAGACCTAAACCCGGTATGGTCTACGGTTTCTTATATGAACTGTTTTTTAACGGTACATCTATGCTGACAATAGTGAATTGCTGA

Transcript

ENSTIFT00000003466

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8BKF1	DNA-directed RNA polymerase, mitochondrial OS=Mus musculus OX=10090 GN=Polrmt PE=1 SV=1
O00411	DNA-directed RNA polymerase, mitochondrial OS=Homo sapiens OX=9606 GN=POLRMT PE=1 SV=2
P69243	DNA-directed RNA polymerase 3A, chloroplastic OS=Nicotiana tabacum OX=4097 GN=RPOT3-SYL PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005224 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00940 all species →	RNA_pol	DNA-dependent RNA polymerase	Family	Interproscan
PF13812 all species →	PPR_3	Pentatricopeptide repeat domain	Repeat	Interproscan
PF14700 all species →	RPOL_N	DNA-directed RNA polymerase N-terminal	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002092 all species →	Family	DNA-directed RNA polymerase, phage-type	Interproscan
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR029262 all species →	Domain	DNA-directed RNA polymerase, N-terminal	Interproscan
IPR046950 all species →	Domain	DNA-directed RNA polymerase, C-terminal domain, phage-type	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR002885 all species →	Repeat	Pentatricopeptide repeat	Interproscan
IPR037159 all species →	Homologous_superfamily	DNA-directed RNA polymerase, N-terminal domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10102 all species →	DNA-DIRECTED RNA POLYMERASE, MITOCHONDRIAL	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0001018 all species →	Molecular Function	mitochondrial promoter sequence-specific DNA binding	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0003899 all species →	Molecular Function	DNA-directed 5'-3' RNA polymerase activity	Interproscan
GO:0006351 all species →	Biological Process	DNA-templated transcription	Interproscan
GO:0006390 all species →	Biological Process	mitochondrial transcription	Interproscan
GO:0034245 all species →	Cellular Component	mitochondrial DNA-directed RNA polymerase complex	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSTIFP00000003222.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.