Detailed information of ENSTIFP00000004474.1 in Montipora efflorescens

Genomic Location: BLFP01000092.1:2783393...2800834
NR annotation: KAJ7381020.1, hypothetical protein OS493_004615 [Desmophyllum pertusum]
Species Montipora efflorescens · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
O00468Agrin OS=Homo sapiens OX=9606 GN=AGRN PE=1 SV=6
P31696Agrin OS=Gallus gallus OX=9031 GN=AGRN PE=1 SV=3
A2ASQ1Agrin OS=Mus musculus OX=10090 GN=Agrn PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000507 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00095
all species →
WAPWAP-type (Whey Acidic Protein) 'four-disulfide core'DomainInterproscan
PF00050
all species →
Kazal_1Kazal-type serine protease inhibitor domainDomainInterproscan
PF07648
all species →
Kazal_2Kazal-type serine protease inhibitor domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036058
all species →
Homologous_superfamilyKazal domain superfamilyInterproscan
IPR002350
all species →
DomainKazal domainInterproscan
IPR008197
all species →
DomainWAP-type 'four-disulfide core' domainInterproscan
IPR050653
all species →
FamilyProtease Inhibitors and Growth Factor AntagonistsInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10913
all species →
FOLLISTATIN-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →
Molecular Functionprotein bindingInterproscan
GO:0005576
all species →
Cellular Componentextracellular regionInterproscan
GO:0030414
all species →
Molecular Functionpeptidase inhibitor activityInterproscan
GO:0005615
all species →
Cellular Componentextracellular spaceInterproscan
GO:0007275
all species →
Biological Processmulticellular organism developmentInterproscan
GO:0030154
all species →
Biological Processcell differentiationInterproscan
GO:0030510
all species →
Biological Processregulation of BMP signaling pathwayInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for ENSTIFP00000004474.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Montipora efflorescens tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Montipora efflorescens, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

AnalysisWhat it doesStatus
Primer designDesign PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.template foundopen →
BLASTSearch this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.template foundopen →
Expression heatmapDraw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.no expression matrix
Gene family / orthogroupLook this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.open →
Gene set analysisStart a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.open →
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