Gene detail

Detailed information of ENSTIFP00000004912.1 in Montipora efflorescens

Genomic Location: BLFP01000445.1:419441...439783
NR annotation: XP_029200095.1, E3 SUMO-protein ligase PIAS3-like [Acropora millepora]
Species Montipora efflorescens · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

ENSTIFT00000005265

GGCTTGGTGCGGGGTTTTGGTATTTCGAAAAAGAATTTCGACATGGAAGAAACTGCGGAACTTCGGCACATGTTGATGAGTTTTCGCGTCTCTGAACTTCAATCACTATTGGGTTTTGCGGGAAGGTCAAAAACGGGAAGAAAGCATGAACTTATGGGAAGAGCGCTCCAAATGTTAAAAAGTGAAGGAAACCATACCGTTAAAAGGAAATTAAGGGAATTATACGAGAGACGATGTGGCCCTGGGAAAGTCGTTGTACCACCACCTCAACCTCGACCAGTTATCCCGCAACAACAGCCAAGACCGTCGATGAATTCGGATACAACCGGTGTTCCTGTTCATCCAGATGTCAGACTTTCACATTTACCGTTCTTTGAACATATCGACGATTTAGTGAGACCCACTAGCTTAGTTCCCCGTGGGATGTCTCAATTCCAAGAAGCTTGGGTCATGTTTCATTTGACACCCAGCCAAGTCCAACTGATAAGTAATTCAAGGGACAATCGTCCAAACTTTCGCAATGAATTTACTGTACAAATTCAGCTAAGattttgtCTGTTTGAAACAAGTTGTGAACAAGAAGATAACTTCCCTTCATCTCTTTGTATCAAAGTTAATGGAAAAATATGCCCCTTACCTGGTTAcacttctcaaaattgcaatcCTAATTCAGAATGTAAACGGCCCAGCAAGCCTATAAATATAACACCTTTATGTCGACTGTCGCCAACTGTGGCAAATCACATTCAGATCTCCTGGACACCAAAATTCGGCCAGAGGCATGTGGTAACGGCAAAACTTGCCCGAGCTGTCACATCTAGCTGTTTGATACAAAGACTAAAGGCACATGGTTACAGAAATCCTGACCATTCAAGGGCACTGATCAAGGAGAAGCTGGCCCATGACCCTGACAGTGAAGTAGCCACTACAAGTTTGCGTGTTTCTCTTTTATGCCCACTTGGCAAGACACGGATGACTCTTCCATGCAGGTCCATCACTTGCAGCCATTTGCAGTGCTTTGATGCAGCTctctatttacaaatgaatgaaagAAAAACAACTTGGATTTGCCCAGTTTGTGACAAAAAGGCGCCATTTGACAAACTTGTATTGGACGGGTTGTTCAAGGAGATTCTAGAAGCTGCAGCTACTTGtaacgaaatttgtttttacgaAAATGGCTCTTGGAGGCCCATAAATGACCAAGAGGCTGAAAGTAAGAAGGCAATCAGTGCTCTGGTATCTGCAACAGTAGTAACACCAGACAGAAGTTCGTCCACCGTAATGAAGGTTCAAGCGGCACCACAGGAACCTGAGAACAGAAAAGACAAGGAGGTACAACTCATTGACCTGACAGAAGACAGTGATACTGATAGCGATTTTGAGGAGACAGAGGAAGACCAGACTGACTACGATAATACAAATGCAACTTTAAGTACATCCAGGGCCACCATTAGCAACAATGTTATTGGAGGCATACCAGGAGTAAAGACACCAACCACATTTGGCTCAATGGTTTACGCAAATAACACAAACACGATGCCAGGATCACCACATGCATCATCACTGTTGAATCCAAACTTCTTTCCTCCGCCTCAGCTTGATTTCCCGTGTCAAGGCATGGATCTTGATTTATATCATCTCTTACCCAATGAACCACCGTATGCTACCGCCGCAATGTACCATGGACTTCTTGGCCCTCACTCGTCATCAAATGTCATTCATCTGGACTGACAGTTATCCAAATACCGGGCACTGAAGTAACTGCATCGAGCTCATTCCTTTGGATTGACAGCATCTGGATAACAATCCCTCACACTTTCAATCCAACTGGAAAATCGGAGATAGCAGCGAGCCGTCGTGGTTGCCAAATAACGCGAAATACCACTGAATCAGACAGTGTAAAATACATCTTTTTATTGTACATAACACTTGAAAGTCCTTGGATCTGAAAAAGATGAACAGCACTGGGCTGTCTGCGTTCTCGAACACCCTTCGGTTTTTATCGGGCTTGAAACCTTAGACGTTATTACTCCTTCCACCCCGCCCCACTCCCCTCGTTCTACTTGAACTACTTCTATGCGAATCAACTCTTTAAAAATGGACAATTTCCCATGTTAATGACGAGAACGCGACATGTGCCAGGGAAATTCAAGATGACCAAGATATTTACCTCTTATTCGGAATTAATTATTTGGAAGTAAATTGTAAGGACGAATTCTGAAAGAAAACGATGAATTAAGCTATTTATTTTTTGTGAGAGAAGTTTGTCTTGTGGGCCTTCCTAACTGTTGTCACGTAATGTGCTGTGAATACTCAAATGGTATCACTTCCAAGTGGCTGTATTTGGGCGTCATCCTAATTTAGGTGTTAGTCATGGATGACTCTGGAACTGTGCTATGCCTTTAAATCGTTAATTGTGCAAATAACCATTCTTGGAATACAATAAACTTCACTTTTAAAACTAAATCCCTGGTTCCCTTTTTATCCCTGCTTCGCTGTTTCGTGATTACTAGTAGTGTTGGGCTTGGAGGATTTCTTTTTCGTG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9Y6X2	E3 SUMO-protein ligase PIAS3 OS=Homo sapiens OX=9606 GN=PIAS3 PE=1 SV=2
O54714	E3 SUMO-protein ligase PIAS3 OS=Mus musculus OX=10090 GN=Pias3 PE=1 SV=3
O70260	E3 SUMO-protein ligase PIAS3 OS=Rattus norvegicus OX=10116 GN=Pias3 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002299 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14324 all species →	PINIT	PINIT domain	Domain	Interproscan
PF02891 all species →	zf-MIZ	MIZ/SP-RING zinc finger	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR023321 all species →	Domain	PINIT domain	Interproscan
IPR004181 all species →	Domain	Zinc finger, MIZ-type	Interproscan
IPR036361 all species →	Homologous_superfamily	SAP domain superfamily	Interproscan
IPR003034 all species →	Domain	SAP domain	Interproscan
IPR038654 all species →	Homologous_superfamily	PINIT domain superfamily	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10782 all species →	ZINC FINGER MIZ DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0000790 all species →	Cellular Component	chromatin	Interproscan
GO:0003712 all species →	Molecular Function	transcription coregulator activity	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0016925 all species →	Biological Process	protein sumoylation	Interproscan
GO:0061665 all species →	Molecular Function	SUMO ligase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K16064	PIAS3; E3 SUMO-protein ligase PIAS3	EC:2.3.2.-	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Montipora efflorescens tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Montipora efflorescens, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →