Gene detail

Detailed information of ENSTIFP00000007319.1 in Montipora efflorescens

Genomic Location: :...
NR annotation: PFX18110.1, Leucine-rich repeat-containing protein 16A [Stylophora pistillata]

Gene Structure

More details in Jbrowse

Sequence

CDS

ENSTIFT00000007785

ATGAATACGGCTGATTTAAGCGATGAATATAACGACATACTGCAATATGTCGAGCCTAATCTCTTGAGAAATTATGGGGGCAAGACAAAATTTGGAGGGGTGATTTCAACCCTGAAATGTTACGAAGACAACGTGCTGGTTAAGAAAGCTTTGAGTGAAGAAGGAAACAAACGAGTCCTTGTTGTTGATGCTGGAGGCTCTTTGCGGTGTGGCATGTTAGGGGACAACCTTGCTGCTATGGCTGTCAAGAACAACTGGACAGGTGTGATAATGTATGGCTGTATAAGAGACTCGGAAGAGATTGGAAAAATGGACTTGGGTGTTGCAGCAATAGGAACGATGCCATTGAAGTCCATTAAGAAAGGTCAGGGGGACAGAGATATTCCAGTGCGGTTTGGCGGAGTTACCTTTACACCTGGACATTTTGTTTATTCTGATTTTGATGtgatttttttaaacaccAATGATAGATCTTATGTGTGCCTGGTGTTAACCACCATTTTCACTGAAAACGTGCAGTTGGCTATTAGACGAAACATAGAGTTAGCTTTCATCAAGAAAGCGAAAATAGAGTTCAAGGGCGATCGTTCAGAATCAAGAATTTTGGCCCTTTCTGCACACAGACTTTATGTTCTTACCTGTTTAAAGAATGGATGCAAGGTGGATTTCAGTATGcatattttagaaatacagagAATAGAGAGCAGCAAGCCACTTATGATAACACTGTCATGTGGGGACAAGTCACACTATTTTCGACTACCTCAACCAAAAGACATCACTGAGATTATTGCTCACATTTTGGCATCACTTAAATCTAACTTTCCTTCTGGGAGCCCAGATCGTCTTCTGAGAGTGATATATGGGCCACCAGAGGAAAGCAATGAAAGGCAAGAGCAGGTGTCAACGCTTGTTAACAACCTGCGGAATGTGGAAGGAGATGTTGAAACAGGGCCTTGTGGTGGATTTTCAAAAGTTTATGTTTCCATGTGTGATTTTTATGGACAAGCACATTTAGAAGAAGTTGCATGGGATATTGACACAATCTATTTATCACTCAATACAAAAGAACTGAACATTCAGGACTTCGATCATTTGGACCAAAAttatAAGTCCATGcagttattgcaatgtttcattctactttttggacattttgggtgtcgtgaaattacatcattttgcatgacagTACTAGGATCGGAAGTCTGTGATGCAATCATTAGAGTTGTTAAAAAGTCATCAACCTTAGAGGAACTAGTACTTGACAATGTCAGTTTTGGCAGTTCAAAGCCAAAGGTTTATTTGTTGTATAGGTCTGAAGTGGTAGATTACTGCCAGAAACTTGCCTTGGCTCTGACATCGAACCCTAAGACATCATTGCATACTCTGAGTTTGAATGGGAATTCCATAGAGGACAGAGGTGTAGGACATCTGGCTGGTATATTTTGTAAGCTTCCGCATGGTTTGGTTTCTCTCTCTTTGGCTGACAATGGAATCACGTTAAAAGgtGCCAGTTCTCTTGGGCAGGCATTAAAATCAAACAAATATAATGAAAGTACACTGCAGAgATTAGATCTTTGTAAAAACCCTTTGAAAGGAGAGGGAGTTGctGGCCTGTGTGATTTCTTAGCAAAGCCAAACATGTTGACCCACTTGGATTTATCTGCAACAGATTGTCCTCTAGATTTGTTATTTGGGGCCCTCTTTCGAGGCTGTGTTCAACACCTAGCATCTATCAACCTTGCTGGAAACAACTTTTCTTCAAAGAAAAGCAGAGAAGCCGTTGTTCCACCATCGTTTCAGCAGTTCTTCAGTAGTTCACAGGCTCTAAAACTGTTGGATGTATCGGACTGTAAACTCTATGCTGAAAagttaatttttCTTAGAGCTTCAGGAGCTACAGCCATTGCTGAGCACGTGGGCAAACTTAGATGCGTCAGTAGACTGGACATCAGTGATAATGGTTTTGAAGGGGATTTAGTCCAGATCCTTGAGAAAATGGCCTCAAACAAGTCCATGAAACACTTGAATCTGGGGCAGAACACGAGACACTCCAAgAGTTCAGCTGCTGTTATGGAAGCTCTAGTTCAGCTGATATCGGGGGAAAATTCGCATCTAGAGTCCATATCCTTGGCTGAGTCCAAATTGAAAGAGGAAATTGTGCCTCTTCTAGATGCTCTGGGTACTAATGAAAGTGTGAAAGAACTCGACATATGTGGGAATCACATGGGTGATGAAGGAGCTCGCATTTTAGCAAAGGCTCTTCAAATCAATAGTAAACTAAGAACGCTCAACTGGGACAAGAACGGTACATCATACAGAGGGTTTGCAGATATCGCTGCTGCTCTGGAATGCAACCACACCCTTCTATCGATGCCTATACCTCTCCATGATGCAGCACAGTCACTTAAACCTCAAACAGAACAGCACCTAAAAAAGattgAGAAGTTGTTACTCAGAAATCAGTCTCCTCACAAAATTGTAACAGAGCAGGCGTACAGATTACAGCAGGGTCTCTTTCTCGCGTCCACTCAGCAACAGATGGTGGACCGTCTCGTGGTTCAATTGCAAGACCTCATCAGCGAGCTCCGACTTTCCAAGGACACTGATGCTCAGAACGAGATCAAGGCAGCTAAAAATTATGTTCAGGATGCTGACAAGCTTAAACAGcttttgttAAAGTTCCATCTGTGTACGAATGACAGTGATCTGGAGCCGCGTTTTGCTGAGCTTGCTACCGAATTTCATAAAGCTGCAGAGGAAAAAATGaagAGCAATTTGGACAAGATGGTGGATTGTGCAAAAGAAGTCTGCCCTTACATCACATCGACACAAGATGTGAAAAGCCGCCTGGAAGCAGTTGTACAGAACACGCCCCAGTTGAGTGAAACGTTCGTAGAGGAACTGATCCTCACACAAGCCGCAGCTGGAATCGCCAACAGATTAAGCGAAGACAAACTTGGCGTTGCGTCTGTAATGGTGGACACTATCATGGAAATTGTGATTCATCAGCTGGAGAGTTGTATTTCTAAACTGGATTTGCTTCTGAAAGATCATCGAAACAACTTGGATGAAGGAGAAAATGAAGCCGAAAAGAGTTTAGAGGAGGACGATGTGGCAGCGGTTGCTCGTAAAGCGCGTAATCGCCTTAGCGTATCTCAGTTGGCGGTACCCGTGACAGAAGGAAGTGATGCAACCCCGAGGAACCACAGGAGACGCCCTACAGTCAGCAGGCGGCCAACTCATGGCAGAGTATCAGAAgatgaagagaaagaaaaagaggacTCAGGAGAGATCAAAGTGCTGAAGGATGATATAGATGGGAAGGCAGCGCAGCAACAGAGGATCAAATCAGATTTATCAGAACCGAAAGCTTCTGAACTGAAGCATTTGGGTAAGGACCGTCCACGGCCCCCACAGAAAAGGCGCTTACCTACCCGTCCCTCAAGCAAGCCGGTTGTCGCTAATGGCTCCAGCAATGAAGACGCGAAGGAAGAACAAGAAGATATCGACTTGTTTTGGACTGCAACAGTTGAATCagcgccTATTGAGGTTACCCCATCCAGGAAAAAGTCATCAACCTCAAAGCCTCCTACACCCCCTACCGGCAAAACTCCACCGCCCAAACCCGCGCCAAAACCAAAACCGTCACCAAGATCAAAGGACACTACTGAAGTAAGTGGACGTTCGCCTACTCTGtccgtttttcaaaaatacgtTGTGGAGGAGAAAGGGGCCTGCGCTTGGCTCGCTTTTCTCGTCGATTTGTTTGGTCCATTTCCCAGGCCAGCAAATTGCTCTTTGTTTATCAGCCTGGCCGAAATAGGAccctga

Transcript

ENSTIFT00000007785

Protein

Uniprot

Uniprot term	Description
Q5VZK9	F-actin-uncapping protein LRRC16A OS=Homo sapiens OX=9606 GN=CARMIL1 PE=1 SV=1
Q6EDY6	F-actin-uncapping protein LRRC16A OS=Mus musculus OX=10090 GN=Carmil1 PE=1 SV=2
Q8ND23	Capping protein, Arp2/3 and myosin-I linker protein 3 OS=Homo sapiens OX=9606 GN=CARMIL3 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13516	LRR_6	Leucine Rich repeat	Repeat	Interproscan
PF17888	Carm_PH	Carmil pleckstrin homology domain	Domain	Interproscan
PF16000	CARMIL_C	CARMIL C-terminus	Family	Interproscan
PF03737	RraA-like	Aldolase/RraA	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001611	Repeat	Leucine-rich repeat	Interproscan
IPR041245	Domain	CARMIL, pleckstrin homology domain	Interproscan
IPR036704	Homologous_superfamily	Ribonuclease E inhibitor RraA/RraA-like superfamily	Interproscan
IPR031943	Domain	CARMIL, C-terminal domain	Interproscan
IPR010203	Family	Regulator of ribonuclease activity A	Interproscan
IPR005493	Family	Ribonuclease E inhibitor RraA/RraA-like protein	Interproscan
IPR032675	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR051279	Family	Protein Phosphatase 1 Regulatory and Actin Interaction Protein	Interproscan
IPR011993	Homologous_superfamily	PH-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24112	LEUCINE-RICH REPEAT, ISOFORM F-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0008428	Molecular Function	ribonuclease inhibitor activity	Interproscan
GO:0051252	Biological Process	regulation of RNA metabolic process	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0016477	Biological Process	cell migration	Interproscan
GO:0030027	Cellular Component	lamellipodium	Interproscan
GO:0034315	Biological Process	regulation of Arp2/3 complex-mediated actin nucleation	Interproscan