Gene detail

Detailed information of ENSTIFP00000008401.1 in Montipora efflorescens

Genomic Location: BLFP01000867.1:394466...412198
NR annotation: XP_044168844.1, LOW QUALITY PROTEIN: uncharacterized protein LOC114968873 [Acropora millepora]
Species Montipora efflorescens · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

ENSTIFT00000008947

CGAAGTCGTCCTCCCAGATGACTTCAAACTAAAATTCTACGGCCAGGAACAGAATGGTGTTTTGGAGCAGAATCATGAACCCTCATCCGGGGTCTTTGAGAGTTTCCTCGGTAACATATTGGGTGATAAGAGCCAGACGAATTTGCCTTTCAAGCGTCTTCCATATTCAGTGTACGGGTGGTTTGTACGGATTTGGAAGCCCGATGTCCTGGGAAAAGCGTGGCCGAGGTGTATATGGATTAAGTATCACACGAGTCCAGAAGGGAAGTCGTTGACCTGGGCTACGGATCAAGATGGCAAGCCTTGTGTATATTCTCCTGGAGCTTACATCAATAATCGTTCACTGATGCCTTGTCAAGAGCCCCCAGTTGCCATGTCAACGTGGCAGGCGGCCATTCACGTTCCAGAGGGATGTAATGTGTTGATGAGCGGAAATGAGCTTCTCTGCAAAACCACTGCAAGTAATGATCAAGTGACTTTCTTGTATGAGATGTCTATCCCTTTGCCGTGTTCCACCCTTGCCATAGCGGTAGGTTGGTGGCTCAGCCGGAAGTCTAGAAACGCCGAAACCAAATATGGCGACAGTCCTCACGTGCCTATCACGTGTCGGCTTTTTGCCCCGACAAGTTTGATTGACAGCGCGGCCGATGAGATGCTTGGTTACGCTCCGCAGTTTCTGGAAGCTTCTTGTGAGCTTTTGGGTCCGTATCCGTTCAGACGCTTGGATATCCTAGTTTTACCAAAGTGCTTCGCTTGCATGGGACTCAAAAGTCCCAACCTTGTGTTTTTGTCCCAGTCCGTTCTCTCTGGCGATGGCAGTATGCGGGTACGCTTGGCACACGAGATCTCGCATGCGTGGTTTGGCCTGCTTATTGGCGCTAAAGATTGGAGGGAGGAGTGGCTTTCCGAAGGTTTCGCAACTTTTATTGAAGAAAAGATCCAAGCGAGGGCGGAAAAGTGGCCCAATGATAAAGATAGATTTTACCGGGAAATGAGACATATTCTTAGACACAGGTGTCTGTTATCTGAAATCAAGGAGTGTGATGACAATCTTAAGTACTTAAGACCTAAAGTGATTAAACCGCCGAAAGCACTCTCCACCGCCGAAGCAATCGAGAACAGCGTCAATCAGCCAGATTCTGTCCGCCCTCATACTGTGGTGCAGTTCGGTCAGATATGCTCCAGAAAGTGGACGCAAGTCCACTATCTTAAGGGTTATTTTCTTCTTCATCACCTGGCAACCATGGTGGGACGCGAACAGTTCGATAACTTTCTTTACAGCTATGTACAGCATTACAAAGAACGACTGGTGACTTCCGAAgACTTCTTTAACTTTTTCTCGCAAAGTTTCCCCGACATTTCAAGTGCAACTATGGAAGAATTTATTCATGAATGGCTGGAGATGGCTGGATTACCCAAAtctTTCCCAAAAAGGTTTGATAGTCGGGATAATGAACTGATCTGGCGAGTAGAAGAAGAGTTTCAGATTTGGAAAAAACTAGATGCTGTCAACAAAAGAAGAAAGACGCTTGGACAAAAGAAGAGAACAAATGCACCAACTAGTGTGTTGGAAGTCCCAGAACAAGTTGTCCTGTTTTTGGAGAAGCTGTTAGAACGCGAGACGCTATCGCACACTACATTGCGACAACTTGACAGATGTTACGTCTTCTCGTCTAGGAACGCTGAGGTGCGGCATCGTTGGTGTGAACTCATAGTGAAGCACAAATACAACCCGGGCCTGCAGGAGGTGAAGAGATTTCTGATTGAGGACCAGGGGATGGGGATCTACTTGTTCGGTGAGCTGATCATTTCGCAGCAAGCCAAACAACGCGCTTTGGTAGACGAAGTATTGCAGGAGATTGGTGCGGAAATGGATCAGTGTACTTACCAAACAGTTAAAgacatgttggagggcaaggaGTGAAAAGACCAAGAATACAATTTCCTGAGGGGATTTCAGGTTAACATTTTACACAACTTTACTTCGAATACAACATCACAACGAAGACGTTTTCAGGGCTCCCCTGCGCGCGGCTAATTCTAAGGAGAGAAACTTTTCAGAAAGCCGTTTGTCGCAAGGTTTGTAATGATCATTCGTACAAGAGCCCTCGCCATTTATCCACTCATTCTCTGTTTTCTATTTACTGAAAGGTGCACGAACCGAAGCAATTAAATTGATCAGTTGTGCGGAACGATTTAGTGGCCCCTCGGctgaactttttgaaaaacttgcCTTAAATTCTTAGCGCTATTTAAGCAACTTTGTCTTATTATTGTAAATGAGTGTGAATGATAACGTTGTAAAAGTGGAATGTTTAGGGAGTCTTTCAGACTGGTAGTTTTATTCACGTAAAATTCTGGAAAGCTTGAATCGTTGTGAAAATTTGACGTTGATATGGGTGATCACCCGGCAGCTTCAGTGGGTGAGACCACCGCGCAGAGTTTTTACTTCAACCAAGTAAATTCAATCGGATTTTGACAACATCAAATAGCTTTGTCGGGAATTCATATAGAATTTGTCATTTGTGAGTAATTAGCGAATAAGTAGTTTGACTTTTGAGTCACAATGTGTAGGACATAAGAGAGAGATTCAGCATCGCGATTTTCTTAGCCATCATGGCGTGGCAGAGGCGAGAGGCGTTCgaagaggaaaggaaaaggTAGAACC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P69527	Aminopeptidase O OS=Rattus norvegicus OX=10116 GN=Aopep PE=2 SV=2
Q8N6M6	Aminopeptidase O OS=Homo sapiens OX=9606 GN=AOPEP PE=1 SV=2
Q8BXQ6	Aminopeptidase O OS=Mus musculus OX=10090 GN=Aopep PE=2 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004330 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09127 all species →	Leuk-A4-hydro_C	Leukotriene A4 hydrolase, C-terminal	Repeat	Interproscan
PF01433 all species →	Peptidase_M1	Peptidase family M1 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001930 all species →	Family	Peptidase M1, alanine aminopeptidase/leukotriene A4 hydrolase	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR042097 all species →	Homologous_superfamily	Aminopeptidase N-like , N-terminal domain superfamliy	Interproscan
IPR015211 all species →	Domain	Peptidase M1, leukotriene A4 hydrolase/aminopeptidase C-terminal	Interproscan
IPR038502 all species →	Homologous_superfamily	Peptidase M1, LTA-4 hydrolase/aminopeptidase, C-terminal domain superfamily	Interproscan
IPR027268 all species →	Homologous_superfamily	Peptidase M4/M1, CTD superfamily	Interproscan
IPR033577 all species →	Family	Aminopeptidase O	Interproscan
IPR014782 all species →	Domain	Peptidase M1, membrane alanine aminopeptidase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46627 all species →	AMINOPEPTIDASE O	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0008237 all species →	Molecular Function	metallopeptidase activity	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0005730 all species →	Cellular Component	nucleolus	Interproscan
GO:0070006 all species →	Molecular Function	metalloaminopeptidase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSTIFP00000008401.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Montipora efflorescens tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Montipora efflorescens, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →