Gene detail

Detailed information of ENSTIFP00000012578.1 in Montipora efflorescens

Genomic Location: not available for this species
NR annotation: XP_044181331.1, leucine-rich PPR motif-containing protein, mitochondrial-like [Acropora millepora]
Species abbreviation MEFFL · all data for this species · gene families

Sequence

CDS

ENSTIFT00000013488

ATGCGAAATTGCGGTACAGAGCTGTTGTTTGAAAAGCCAGAGGATAGAGTAAAGTTAGCGCATTATTTTTGGGATCGATTAATGGAGATTGGTGTCAAGCCAGATGTTATGCTGTACAATGCTCTCTTATCGGTGTATGTCCAAAACAACCATGACTTCAATCCACTAGACACTCTCGAGAAGATGGAGAAAAACAGTATTGATCCAAATAGGaCCACTTTGCTGTTGCTAATTCAAGGATATGCACTGAAAGGAGATGTTGCAGGGGCTTTTAAAGTTCTAGAGTTTATAAGAGAAGCAGGGATGCCTCTAACAGAGCAAGTGTTTGCAGCCCTTATTACAGCTTATGGTTTTAATGGtgATCCTGAAAGTGCCCTAGGTGTGTTTGATCTCATGAGggagaATGGCCTTGAACCTGAGTTGGACAGTTACACAGCTTTGTTGTCTATTTATGGTGAAGCAGGAAATATGGAGTCTTTAATGGAGacTCTCAGTGAGATGCAGGAAAAGCGAGTGTACCCAAACAAAAAGGTGTTTCTGGCAGTGCTTGATTCGCTTTCAAAACGAGGTCACCATGCTCAAATAAGCGAGcTTCTTCAAACACCCATTGTGAGGAGTCTAATTGATGGAGACTTGAAAGATCTAATGATTGCCGTAGCAACTCGTGGTGAGATCAACAGTGCTTTTATTTTCCTTGGTCACATGATAGAAACAAGTTCAAACAAAAGGACACCTGTGAGAGCAGAGTTCGCCCTGCTTAAGCAAGTTATCATGTCTGGACAGccAGTGGATGCTATTCTTGTGACCATTAGTGAGCTGGAGAAATTAGGATTGTTTAGAAATGTCTATGAAGATGCCTTAGACATatcatttgacaaaaaaaatccagAAATTAGCAGTGCTATTTTGCAAGAAATGCTACAAAAGAAGTTGAGGGTGCGAGTGCACTACTTTTACCCACTTCTTGCCATGTACGCTAATAATCAAGATGCTAAAGGTGCTCAAGACGTTGTGAACTTAATTGGAGGAAATGGATTTGGGATGACAGGAACTGTgttcaggttcttagtgaagtCTTATGGGAATCCAGATGCAAATGACGTGGAggcttttattaatttttcgcAGgATGTCCCAATTTCAAAGTACTTGCTGACAACAATGGCACAATTGGTCATGTCAGCAGGACAGCTGGAAAAACTACAAACAACaattgagtatgcaaagaaagaaaatattaatCCTCTGGCCATTACTGATGCCTTTGCGGGATATATATCCAAAAAGGATTTTGATCCGAGAAATGGACTTGAGATAGTCAAGTTACTTGATAGCCTTGACTGCACACAGGGGCTTTCTACGGTAATTTATAAAGCCTGTGAAAAATGTAGTGCCCAACAAGTGATGAATAGAGTGGAGTTTGTTAATCTCCTTCTACAAGAAGGTTTAGGACACCATCTTGAGTCTCGCACTTTCAACTATGTGATGGGCAGTCTCTCAGACAACAGAATGGCCACCGAGTTTTACGAGTTTGTAAGAGTATTAAGGGAAAACAAAGTTCAATTGGACATTCACCATTACAGGCAAATGCTGAGGATGTTGGCTTTTGATGGGAAAGCCGAAGCTGCACAGTTTTGTTTCGATAAATCTGCGCAATTGGAAGAACCAACCGCACTGATGTCTAGTTACCTGATGCAAGCGTATGCTCACTGTCCAGAAGGAGGAATGCATGCCAGTGCTCCAAAGGAAAGGAATATGAGACGAATTATCCAATTGTACAATGAAATGTGGGAACAAGGAAAAAGTCTTACAGCTCGAGCAAAGGGCGCATCCTGCGTTGCTCATCTGGTGATGGGCTACTTGGAAAGGGCAGAGGAAATAAGGAAAGCTCAGGGCCTTGGTcaaccaaagaaaaaagtaTTATTTGAGTTTCTGAAAGCGTATTCAAAACGTGGTGATGTAGCAAAGACACAGGAAACTTTCGAAGAGCTTAAGAAGGAGATGAAGGATATGGTCATTCCAACAATCATGTACAACAATCTCATGCAGGTTTATGGATTTCATGGCGACTTTGACTCTCAATGGAAAGTCTTCGAGGAGATGAAGCAGAATGACGTGAAACCAAATCTGTTCACGTTTTCTAACATTATGAGGACCCACTTACTCAAGGACGACATTGATAAAGCATTAAAATTGTACCAAGAAGTGAAAGAACAGGGAATGTTTATAGCAGATTCAACTTGTCTGTTGCTTTTAAACTCCATGGCTCGAACAGGGCAGACAGAACAATTTGAGAGTGTGCTGGAAGATATCATTACAAACCGAACAGCATCAgccaataaatttaaattgatgGGGTTGCTCCGTGGCCTGATGTTTTGTTGCCTTCACGCTGGAAAGAAGGATCTTGCTTTGAAACTCcaattgGAACACGAAGTTCAGACGGACAATAAATCATTTGTGGGATTAGCTGAAAGCTCAGCAAAAAGAGGGGAGGTTCCTGCAATATTGAACGCCATTGAATTCTTCAAGGAAAATCAAATGAATCCGACAGCATTATACGTACCACTGCTCAGAGCACATGATGCACGAAAGGACCCTGAAGCTCTTAAGGGTGTGTATGAGCAACTGGTGTCAGATGGAGTGGAACTCAGTGAAGCATTTCTCCAGCAATACAAGCAAATCTTGTTGAAGTACTCCATAACAGCGGCAGGTGATACAGTCGTAACTCCACAGGCAAGTATCTATGGGCTTGTATAG

Transcript

ENSTIFT00000013488

AGAGGGTGGAATCACATCTTTACAAGCCTATCAGGTTATGCGAAATTGCGGTACAGAGCTGTTGTTTGAAAAGCCAGAGGATAGAGTAAAGTTAGCGCATTATTTTTGGGATCGATTAATGGAGATTGGTGTCAAGCCAGATGTTATGCTGTACAATGCTCTCTTATCGGTGTATGTCCAAAACAACCATGACTTCAATCCACTAGACACTCTCGAGAAGATGGAGAAAAACAGTATTGATCCAAATAGGaCCACTTTGCTGTTGCTAATTCAAGGATATGCACTGAAAGGAGATGTTGCAGGGGCTTTTAAAGTTCTAGAGTTTATAAGAGAAGCAGGGATGCCTCTAACAGAGCAAGTGTTTGCAGCCCTTATTACAGCTTATGGTTTTAATGGtgATCCTGAAAGTGCCCTAGGTGTGTTTGATCTCATGAGggagaATGGCCTTGAACCTGAGTTGGACAGTTACACAGCTTTGTTGTCTATTTATGGTGAAGCAGGAAATATGGAGTCTTTAATGGAGacTCTCAGTGAGATGCAGGAAAAGCGAGTGTACCCAAACAAAAAGGTGTTTCTGGCAGTGCTTGATTCGCTTTCAAAACGAGGTCACCATGCTCAAATAAGCGAGcTTCTTCAAACACCCATTGTGAGGAGTCTAATTGATGGAGACTTGAAAGATCTAATGATTGCCGTAGCAACTCGTGGTGAGATCAACAGTGCTTTTATTTTCCTTGGTCACATGATAGAAACAAGTTCAAACAAAAGGACACCTGTGAGAGCAGAGTTCGCCCTGCTTAAGCAAGTTATCATGTCTGGACAGccAGTGGATGCTATTCTTGTGACCATTAGTGAGCTGGAGAAATTAGGATTGTTTAGAAATGTCTATGAAGATGCCTTAGACATatcatttgacaaaaaaaatccagAAATTAGCAGTGCTATTTTGCAAGAAATGCTACAAAAGAAGTTGAGGGTGCGAGTGCACTACTTTTACCCACTTCTTGCCATGTACGCTAATAATCAAGATGCTAAAGGTGCTCAAGACGTTGTGAACTTAATTGGAGGAAATGGATTTGGGATGACAGGAACTGTgttcaggttcttagtgaagtCTTATGGGAATCCAGATGCAAATGACGTGGAggcttttattaatttttcgcAGgATGTCCCAATTTCAAAGTACTTGCTGACAACAATGGCACAATTGGTCATGTCAGCAGGACAGCTGGAAAAACTACAAACAACaattgagtatgcaaagaaagaaaatattaatCCTCTGGCCATTACTGATGCCTTTGCGGGATATATATCCAAAAAGGATTTTGATCCGAGAAATGGACTTGAGATAGTCAAGTTACTTGATAGCCTTGACTGCACACAGGGGCTTTCTACGGTAATTTATAAAGCCTGTGAAAAATGTAGTGCCCAACAAGTGATGAATAGAGTGGAGTTTGTTAATCTCCTTCTACAAGAAGGTTTAGGACACCATCTTGAGTCTCGCACTTTCAACTATGTGATGGGCAGTCTCTCAGACAACAGAATGGCCACCGAGTTTTACGAGTTTGTAAGAGTATTAAGGGAAAACAAAGTTCAATTGGACATTCACCATTACAGGCAAATGCTGAGGATGTTGGCTTTTGATGGGAAAGCCGAAGCTGCACAGTTTTGTTTCGATAAATCTGCGCAATTGGAAGAACCAACCGCACTGATGTCTAGTTACCTGATGCAAGCGTATGCTCACTGTCCAGAAGGAGGAATGCATGCCAGTGCTCCAAAGGAAAGGAATATGAGACGAATTATCCAATTGTACAATGAAATGTGGGAACAAGGAAAAAGTCTTACAGCTCGAGCAAAGGGCGCATCCTGCGTTGCTCATCTGGTGATGGGCTACTTGGAAAGGGCAGAGGAAATAAGGAAAGCTCAGGGCCTTGGTcaaccaaagaaaaaagtaTTATTTGAGTTTCTGAAAGCGTATTCAAAACGTGGTGATGTAGCAAAGACACAGGAAACTTTCGAAGAGCTTAAGAAGGAGATGAAGGATATGGTCATTCCAACAATCATGTACAACAATCTCATGCAGGTTTATGGATTTCATGGCGACTTTGACTCTCAATGGAAAGTCTTCGAGGAGATGAAGCAGAATGACGTGAAACCAAATCTGTTCACGTTTTCTAACATTATGAGGACCCACTTACTCAAGGACGACATTGATAAAGCATTAAAATTGTACCAAGAAGTGAAAGAACAGGGAATGTTTATAGCAGATTCAACTTGTCTGTTGCTTTTAAACTCCATGGCTCGAACAGGGCAGACAGAACAATTTGAGAGTGTGCTGGAAGATATCATTACAAACCGAACAGCATCAgccaataaatttaaattgatgGGGTTGCTCCGTGGCCTGATGTTTTGTTGCCTTCACGCTGGAAAGAAGGATCTTGCTTTGAAACTCcaattgGAACACGAAGTTCAGACGGACAATAAATCATTTGTGGGATTAGCTGAAAGCTCAGCAAAAAGAGGGGAGGTTCCTGCAATATTGAACGCCATTGAATTCTTCAAGGAAAATCAAATGAATCCGACAGCATTATACGTACCACTGCTCAGAGCACATGATGCACGAAAGGACCCTGAAGCTCTTAAGGGTGTGTATGAGCAACTGGTGTCAGATGGAGTGGAACTCAGTGAAGCATTTCTCCAGCAATACAAGCAAATCTTGTTGAAGTACTCCATAACAGCGGCAGGTGATACAGTCGTAACTCCACAGGCAAGTATCTATGGGCTTGTATAGCATAACGTTTTCCTGTTCAAGATCCAGTGAGGATAAAAAAagctaattatttttttattacaattttcttttccttgttacACCCCTTTAATTTTTCTCTAGTTCTTTCTCA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q28C74	Leucine-rich PPR motif-containing protein, mitochondrial OS=Xenopus tropicalis OX=8364 GN=lrpprc PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004431 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01535 all species →	PPR	PPR repeat	Repeat	Interproscan
PF13041 all species →	PPR_2	PPR repeat family	Repeat	Interproscan
PF13812 all species →	PPR_3	Pentatricopeptide repeat domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR033490 all species →	Family	Leucine-rich PPR motif-containing protein	Interproscan
IPR002885 all species →	Repeat	Pentatricopeptide repeat	Interproscan
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46669 all species →	LEUCINE-RICH PPR MOTIF-CONTAINING PROTEIN, MITOCHONDRIAL	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003730 all species →	Molecular Function	mRNA 3'-UTR binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0070129 all species →	Biological Process	regulation of mitochondrial translation	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSTIFP00000012578.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.