Gene detail

Detailed information of ENSTIFP00000012907.1 in Montipora efflorescens

Genomic Location: not available for this species
NR annotation: XP_029212397.1, U4/U6 small nuclear ribonucleoprotein Prp3-like [Acropora millepora]
Species abbreviation MEFFL · all data for this species · gene families

Sequence

CDS

ENSTIFT00000013840

ATGGCAGTTAGCCGAAGAGAGCTGGAAGAACTGAAGCCATGGGTTGAAGAAACTGTGAAACGACGTCTCGGTTTTAGCGAGAAAAGCGTCGTAAACGCAGCTTTGTATTGTGTGACAAACAATTTGGACAGAAGTTCATCTCGAGAGAAGATGACCTCGCTTTTGGATGATCTAGCCCCCCAGTTTGTAACAGACTTATTTGAAAAGTTATCTGAGTTAAAGAGGAACAAGAATTTCAACTCCGGAAAGAGCTCTCTGTCCAAAAAACGAACATTGGAGGATGTATTTGGAGATGATAATCAGGACGACCGTGGAGAGTCATCTCATCTTAAAAGTAAACGAAAACAGAGCAGGTTTGACGCATTGATGGATGATAACATTCCCTTACCACCTGCAATGCCAGAAACATCAGATAGACCCACCCCAATGAGTAGCAATCAAATTAGTGAAATGGTTGCAAGtatgaaaaaacaaatcgaaGAACGAAAGAAACAATTAAATGTGATGAGGCAGGTGCAAACAACTATTCCTACTGCACAGCCAGTTCAGCTTACTCCTCAGCCAGTTCCGAGTTTAGTACAGCAACAAGAATTGATGAACGAAGCAATAGAAAAGGCTAAACGTGCAGCTGAACTGCAGGCAAAGATCCAAGCGCAACTGGCTAACAAACCTAACCTGTTCTCTAATACCAACCTTTCAAGTGCTGGTGCAAACCTCATCAAGTCAGGATTAATTTCTTTGACTGCTGTTAAAGAAGACACCTTACATCCCAAAGCACTGATCCTTGACCAGTCTGGTCGCACTGTTGATTCAACGGGAAGAGCAGTCCAGCTTGCAAGCAGAATGCCAACACTGAAGGCAAATATTCGTGCCAAGAAGGCAGAGCAGTTCAAGATTGAAAAGCCAACAGAGGACCTGAATGAAAGCAAATATTTTGATCCCCGAGTGGGAATCAAATCAGCACAACGAAACAAGAGGGGATTTAAATTTCATGAGAGAGGAAAGTTTCAACAAATAGCTCAAAGAATACGAGCAAAGacaCAGCTTGATAAACTTCAAAAGGAGATAGCAGCAGTTGCAAAGAAAACTGGAATTTCGTCAGCAACCAAACTTGCCTTGATCACACCTAAAGAAGCACAAGAGGATTTCATTCCAGATATTGAATGGTGGGATGGAAATATCCTTCCTGCAGGAAATTACATTAATTTGCCAAATGAAGGAATTGATGCAACTGTTGTTGGAGTGACAGCACTAGTAGAGCACCCTGTACAAAAACACCCAGCAGCTGAGCCTAAAGAAGCACCATCCGTTCCCATCatgttaacaaaaaaagaaaggaaaaagatcCGCACTCAACGTAGACGAGAAATCGAGAAAGAGAAGCAGGAGAAAATCAGACTTGGACTAGAACCACCCCCACCCCCTAAAGTGAAAATCTCTAATTTGATGAGAGTTCTTGGTAATGAAGCAGTTCAAGATCCAACCAAAGTAGAAGCTCACGTCCGAGCACAGATGgcacaaagacaaaaGGCCCATGAAGCTGCCAATGCAGCACGAAAACTCACCCCTGAAGCCCGACGAGAGAAAACAATCCGAAAATTAAAGGAGGACACTTCACTTggtgtacatgtagctgtgttCAGAGTCACAGAATTAAAAAACCCACAGAGAAAATATAAAGTGGATATCAATGCACAACAGCTTTTCCTGACAGGATGTGCTGTTCTCTACAAAGATGTCAATCTTGTGATAGTAGAGGGAGGTCCAAAAGCGGTAAAGAAATTCAAGCGTCTAATGTTGCATCGAATCAAATGGCAAGATGAGAAAGagtctgatgatgatgatgatgaaggacAGCAGTCAACTGGTAGGAAGACACAGCcttgtgtccttgtgtgggAGGGAACTaacaaggaaaggaacttcagcGATTGGAAATTCAAACTCTGTCCAATGCAAACAACTGCTAGGGAACACCTTAAAAAATATGGTGTGGAACATTACTGGGATTTGGCTCTCAGTGAGTCATTGCTACAAAATGCAGATGACTAA

Transcript

ENSTIFT00000013840

cgatttcaaaatggtggatgCAAGCACTTAGCAGCAGCAGAAAAGGTCGTCAATTTGTTGAACGTAAAATATATCATTGAACCGAAAGACATGGCAGTTAGCCGAAGAGAGCTGGAAGAACTGAAGCCATGGGTTGAAGAAACTGTGAAACGACGTCTCGGTTTTAGCGAGAAAAGCGTCGTAAACGCAGCTTTGTATTGTGTGACAAACAATTTGGACAGAAGTTCATCTCGAGAGAAGATGACCTCGCTTTTGGATGATCTAGCCCCCCAGTTTGTAACAGACTTATTTGAAAAGTTATCTGAGTTAAAGAGGAACAAGAATTTCAACTCCGGAAAGAGCTCTCTGTCCAAAAAACGAACATTGGAGGATGTATTTGGAGATGATAATCAGGACGACCGTGGAGAGTCATCTCATCTTAAAAGTAAACGAAAACAGAGCAGGTTTGACGCATTGATGGATGATAACATTCCCTTACCACCTGCAATGCCAGAAACATCAGATAGACCCACCCCAATGAGTAGCAATCAAATTAGTGAAATGGTTGCAAGtatgaaaaaacaaatcgaaGAACGAAAGAAACAATTAAATGTGATGAGGCAGGTGCAAACAACTATTCCTACTGCACAGCCAGTTCAGCTTACTCCTCAGCCAGTTCCGAGTTTAGTACAGCAACAAGAATTGATGAACGAAGCAATAGAAAAGGCTAAACGTGCAGCTGAACTGCAGGCAAAGATCCAAGCGCAACTGGCTAACAAACCTAACCTGTTCTCTAATACCAACCTTTCAAGTGCTGGTGCAAACCTCATCAAGTCAGGATTAATTTCTTTGACTGCTGTTAAAGAAGACACCTTACATCCCAAAGCACTGATCCTTGACCAGTCTGGTCGCACTGTTGATTCAACGGGAAGAGCAGTCCAGCTTGCAAGCAGAATGCCAACACTGAAGGCAAATATTCGTGCCAAGAAGGCAGAGCAGTTCAAGATTGAAAAGCCAACAGAGGACCTGAATGAAAGCAAATATTTTGATCCCCGAGTGGGAATCAAATCAGCACAACGAAACAAGAGGGGATTTAAATTTCATGAGAGAGGAAAGTTTCAACAAATAGCTCAAAGAATACGAGCAAAGacaCAGCTTGATAAACTTCAAAAGGAGATAGCAGCAGTTGCAAAGAAAACTGGAATTTCGTCAGCAACCAAACTTGCCTTGATCACACCTAAAGAAGCACAAGAGGATTTCATTCCAGATATTGAATGGTGGGATGGAAATATCCTTCCTGCAGGAAATTACATTAATTTGCCAAATGAAGGAATTGATGCAACTGTTGTTGGAGTGACAGCACTAGTAGAGCACCCTGTACAAAAACACCCAGCAGCTGAGCCTAAAGAAGCACCATCCGTTCCCATCatgttaacaaaaaaagaaaggaaaaagatcCGCACTCAACGTAGACGAGAAATCGAGAAAGAGAAGCAGGAGAAAATCAGACTTGGACTAGAACCACCCCCACCCCCTAAAGTGAAAATCTCTAATTTGATGAGAGTTCTTGGTAATGAAGCAGTTCAAGATCCAACCAAAGTAGAAGCTCACGTCCGAGCACAGATGgcacaaagacaaaaGGCCCATGAAGCTGCCAATGCAGCACGAAAACTCACCCCTGAAGCCCGACGAGAGAAAACAATCCGAAAATTAAAGGAGGACACTTCACTTggtgtacatgtagctgtgttCAGAGTCACAGAATTAAAAAACCCACAGAGAAAATATAAAGTGGATATCAATGCACAACAGCTTTTCCTGACAGGATGTGCTGTTCTCTACAAAGATGTCAATCTTGTGATAGTAGAGGGAGGTCCAAAAGCGGTAAAGAAATTCAAGCGTCTAATGTTGCATCGAATCAAATGGCAAGATGAGAAAGagtctgatgatgatgatgatgaaggacAGCAGTCAACTGGTAGGAAGACACAGCcttgtgtccttgtgtgggAGGGAACTaacaaggaaaggaacttcagcGATTGGAAATTCAAACTCTGTCCAATGCAAACAACTGCTAGGGAACACCTTAAAAAATATGGTGTGGAACATTACTGGGATTTGGCTCTCAGTGAGTCATTGCTACAAAATGCAGATGACTAAATCATGCCAGCTCCCTCTAATTCGACTTTTTTTGTATGAAAAGGCGAGCATGTTCAAGTACCACTTTCGTCATTCTTCAAAGTGTTCATTGAGCATAGGTGCAAATTATTAGATACTTTGAATTTGTGGCTCAACAGCTTTCCTAGTTTTCCTTTCCCCAAACCAACTGCCGAACTTGTACTCTAATCTGTAGTTTCCTTTTTGAGCGATTTTATTTGCCATATTTGACACATTTAGACATAACGGCCATTTCTGTGTTAATTCATTTTTTGAGAAAACTAACTGACCTTCGACATTTTCAGTGTTGCTTGTTTACCAGACAGAACTGTCTTTCAACAATTGACATTAACAATAAGTAAAAATCTTTAGCAAACATGGAAGTTAAGAAGTCTTGTTTTTAGGAgggcaaaaatgaaaaaaacctgGTCTTAAATAGTAGCTAGGGATCCTTCAAACATTGCTCCCTCCCTAACAGGCATTTTTAACGATATTAACCTTCTTGCTGAGCTTACTCTCTCCATCAATCTACTATTAAATCAGTGACTTCATCTACTATAGCAAAcacattttttcttagttttcccAAAAGTTCATGTTAAAGTACATGTAGCCATAAAAGCAACCAAAACTGTTAATCGTTTATCCTGCGAATGAGCAAATGacatagacctctttcacaATGGCCG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5ZJ85	U4/U6 small nuclear ribonucleoprotein Prp3 OS=Gallus gallus OX=9031 GN=PRPF3 PE=2 SV=1
Q922U1	U4/U6 small nuclear ribonucleoprotein Prp3 OS=Mus musculus OX=10090 GN=Prpf3 PE=1 SV=1
O43395	U4/U6 small nuclear ribonucleoprotein Prp3 OS=Homo sapiens OX=9606 GN=PRPF3 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005493 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01480 all species →	PWI	PWI domain	Family	Interproscan
PF06544 all species →	Prp3_C	Small nuclear ribonucleoprotein Prp3, C-terminal domain	Domain	Interproscan
PF08572 all species →	PRP3	pre-mRNA processing factor 3 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002483 all species →	Domain	PWI domain	Interproscan
IPR010541 all species →	Domain	Small nuclear ribonucleoprotein Prp3, C-terminal domain	Interproscan
IPR027104 all species →	Family	U4/U6 small nuclear ribonucleoprotein Prp3	Interproscan
IPR013881 all species →	Domain	Pre-mRNA-splicing factor 3 domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14212 all species →	U4/U6-ASSOCIATED RNA SPLICING FACTOR-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000398 all species →	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0046540 all species →	Cellular Component	U4/U6 x U5 tri-snRNP complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12843	PRPF3, PRP3; U4/U6 small nuclear ribonucleoprotein PRP3	-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.