Gene detail

Detailed information of ENSTIFP00000013232.1 in Montipora efflorescens

Genomic Location: not available for this species
NR annotation: XP_015775222.1, PREDICTED: DNA-directed RNA polymerase II subunit RPB9-like [Acropora digitifera]
Species Montipora efflorescens · all data for this species · gene families

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P36954	DNA-directed RNA polymerase II subunit RPB9 OS=Homo sapiens OX=9606 GN=POLR2I PE=1 SV=1
P60898	DNA-directed RNA polymerase II subunit RPB9 OS=Mus musculus OX=10090 GN=Polr2i PE=1 SV=1
P60899	DNA-directed RNA polymerase II subunit RPB9 OS=Sus scrofa OX=9823 GN=POLR2I PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009375 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02150 all species →	RNA_POL_M_15KD	RNA polymerases M/15 Kd subunit	Domain	Interproscan
PF01096 all species →	TFIIS_C	Transcription factor S-II (TFIIS)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001529 all species →	Domain	DNA-directed RNA polymerase, M/15kDa subunit	Interproscan
IPR012164 all species →	Family	DNA-directed RNA polymerase subunit/transcription factor S	Interproscan
IPR001222 all species →	Domain	Zinc finger, TFIIS-type	Interproscan
IPR019761 all species →	Conserved_site	DNA-directed RNA polymerase M, 15kDa subunit, conserved site	Interproscan
IPR034012 all species →	Domain	Pol II subunit B9, C-terminal zinc ribbon	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11239 all species →	DNA-DIRECTED RNA POLYMERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006351 all species →	Biological Process	DNA-templated transcription	Interproscan
GO:0001193 all species →	Biological Process	maintenance of transcriptional fidelity during transcription elongation by RNA polymerase II	Interproscan
GO:0003899 all species →	Molecular Function	DNA-directed 5'-3' RNA polymerase activity	Interproscan
GO:0005665 all species →	Cellular Component	RNA polymerase II, core complex	Interproscan
GO:0006283 all species →	Biological Process	transcription-coupled nucleotide-excision repair	Interproscan
GO:0006367 all species →	Biological Process	transcription initiation at RNA polymerase II promoter	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03017	RPB9, POLR2I; DNA-directed RNA polymerase II subunit RPB9	-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.