Gene detail

Detailed information of ENSTIFP00000014111.1 in Montipora efflorescens

Genomic Location: not available for this species
NR annotation: CAH3147432.1, unnamed protein product [Porites evermanni]
Species abbreviation MEFFL · all data for this species · gene families

Sequence

CDS

ENSTIFT00000015138

CGTACCGCCGCCTTGAacgtggaaaaaaaaatcgcttttTTGAAAAACACTTGGGCGTTGATATTTCTTACTAATATGGATGGCTTGTATCTGAAAATAACTGAAGATTTTGCGCCAGACCCTAAAGAAGCGAGATTCGGAGGCAAAGATGCGCCGATGGCTGTTGAAAAGGGCGACATTATTTTTGATGTTCGTAAGCGCGGTGATGGCTGGATGTACGGCAAGAATTTAAACAGTGGAAAAACGGGAAAGTTTCCGGAGAGTTGCGCGGCCAAATTATCGGGAAATAAAAATGGTAGCGGATCCGACAATCCTCAATCGGACAAGAAAGACGCAAAACCTGCTTCGAAAAACGAAATAAGCAAACCCTCGTGGCTTCAAAATCGAAATACTTCCAGTACacctgaaaacagaaaaacgccGTCTTATCCAAAGCCTTATGTCGGAAATAACGGGAAAACGCCCGAGAAAGttgaagaaaagaaggaaacatcGGGTGATTCTGGAGTGGTTGAGGACTCTAGTGAAGGTGGATATTGTAACGCCGATTATGAGCCAAAAACAGCGAACCGCGACGCTTCGAAAACCGGAAATACGGTGAAGGGCTATAAACAAAAAGAAGCTGGAATTGCTCCGAGATCTCTGGCGTCGAGTCGACAGACATGTGACAAACAAATACCAGAGACAACTAAAGGGCCTGAGAAGGACGAGAAGGAATCTGAGAAAGCGATTGGAAAGGAGTCTTTCAAGTTAAATTTGAACCACGGTGGCGAACGGTCTACGCAATCGAAAGCAGTTCCGAAGACAACAAGAAATTTCCAGCGATCAACCCCCGTGCCACAGGAGGCGTTGCGAGAGAATCTTGACGAAAATTACGAACCCGTTGAAAAGAAAAGCGAAGAGAAAGGACCGCAGTTATCGAAAGCAGTTTCGACGAAAGATGGACCAAAAATAGCTGATACGAAAGCGGCTAAAATTGACGCGACAGATGACTCGAAGAAAGCGAACCAGATTCTTAATCATTCAGACGTGACCACAGATAGCGTTGCTGGGGGTGTTGGAGTTAATATTCAAGAAAATCCATTGCGAAGAGACAAAAGCAGCATTTATCAGGTCCCCGGGTTCGTCGGGCCACCGAAACCCGCTCGAAATCTTGTTGCGGGTTGTGCGGAGTGCAACGATCCGCACATCTACGAAACTCCAATGGTTTCTAAGACACCACCGGAGTCTCCTGCGTTTGACAAAAAAGACGGCAAAGGGATGAAGCCGGAGAAACCGAAAGACACCCAAGGGAAAGATGGCTCGACCAGCTTGAAGCCATCATCATCAGTGATAAGAAAGACGAAGGAGCAAATGAAGCACCGAATGGCTTCCTACGAGGACATCGAAATGGAAGGGAGGCGATCGGATGAAGAGAGTTTCAAGGATGCCGATCTTGTCGCAAAACAAACCAAGGAGAAATTACTGACGCCCAACAGACGCCCAAAGCTGCGGATTTTGCTGGGCATATTTTCCGGTTTACTGCTGGGTGTCTTCATATTTTTGACACTGTTCTTACTTGCACAACAGCACGTTCTCACTTGCGCTGTTTCTGCTTTCTTGATCGCCTTTGTTGTAGGAACAATTTTCGGCTTTCTCGACAAAACTCGGCTACAGTGCATCGTTCTTCTTATCTTCCCGAGTCTATTCGCTTCGGGCGGGAAAATTTGTCTCTGGATTCTGATCACATTTTTCCTAATATCCGGACCGATGTGTAACTTTATTGAAAATGTACGCATTGTGGCTCTAAGCCGTGGCTGCTTAATGGCTTCGGACAGATTAGCAGACAATGACAGTTTTAACGGATCTGTGTTTATGGTGAACGAGGACAATCGAGCTATTGTGCAACGAATGCAGAAGTTCGAGAACATCTCTCACGCGCTTCAGACATACATAAACGATTCTCTTTTGCTTTCGTCATTTGTCAGAAATGATAATTTGACAAGTGGGGTCAAAGACAATCCATCAGAGGTTATTTGCATGCGATATTTACTCCGTGCCCATAACATCTGTTCTGCGGAGGTCGAGAACATGTACACCGAATGTAATCGAACTGCGCGTGGAGCAAAGTGCGAGTTTATTTCGGCGAAGAACGCTTGTAATCATTTATCGAAACCTCACGCCTCGAACTCATGCCGAAGCATAGCCTCTGAAAATGTCAACAAGTTGttgcaaataaaagaaataattaaacTGAGCCCTCAACgaatggaaacaaaagaagtgCAACGCGGGGAGGAAACCATTGTTATCACCCCAGGAAAGTTATGCGAATTTACCTCTTTCCTGGTTATGCTTCTGCCGCTTTTAGCGCTTCTAGTTATGTGCGAAGCCTATAGTTATCACAAACTTTATCTGTCTTGCAATGAATTTGATAATCACTACCTCACAGTGAGGTTCAAAGCCATAGAGGACATGCGCAAATCGAGTGGTGCCGCTGACCTGTTGGTACCTCTGAAGAAAGCCGAGCTTCAACAGTTTGTGCAGCCCACCGCTTGTCATCTCGCGAAGGAAGAAAAGGCCAGCTTGCTCAAGTACTTGGTGGTATACCTGATTTACTTGCTTTTCGCTCTGACGGTTGTTCTCCTGGACTATTTTTTCTATGTTGTTATCACTAACGAAGAACCACAATCCAATATTTCGAAGAAGTGTGATGGAGATCTTGAGAGCCCTCAAGAGGTTTACACTATCGTTTTATCAGCTCTGCTTGGCGTGTTATTGCTGATTATTCTGTTACAACCTTTTATGCTTCGTTTGCGCCGTTTGATCTCCTCGCGTTTTTACCCCAGACGAGAAAGAAAACGCATCGCCTACCTCTACTACAAACTACTTGAAGAGCGCAAGACCTTTTACAGAGCCGTTATCGAAAACATGAACAACTTCGCTGAAGAAACGGATATGTTTAATAGACTAGACGCAGTGTTGGTTCTCTGTAACAATTTCAGCTGGTTCAAGAAAGTTTTGGAGTTTGTAGGCGTCAACCTTCGTAGATGCTCTGTTTGTGGTACAGGGCTCAGCAAGAAGTATTTGTTCTGTGATACTGGAGACTGTGATGTCATTTACTGCCGAACCCTTTTTGCCTGTTATGGCAGAGTTTACGCTTGGAATGCAGACGAGATCTTTACGTTACGCTCGAAGCATCGCATAGTTGGCTCTCTGATTGGGTCTTTACCTCGCAAACCTAGACAAAATAGTGTTTTCTCATTGCCACTTTTATTGTCAAGGGAAGAAGCGACGTTGTTGCTCGACAAGGGATTTGCTCAGATCTACGATATGCCAAAAACTCTCCCAACACCGTGCAATGAAGAAGTTGAAAGATTTAATGAGCAACGTCAGGGTAGCATATTGAAACAAATTGAAGTATTTCAAATGATGCAAAAAGAGAAAAGGATGGAACTTGCCGACGTTATTGAGGAAGGCAGGCGAAGAAAACAAAACTTGCTgtcaaaaaagatgaaaaatgaAGCAAAGAATGGTGGCACAATTATGAGCAATGATTCAATTGCAACTGTAGAACAGGAGCCGAAAAATAGTGATGCGATAAAGGCTGATGTAGAAACCTTGTCGACAAGTTCAGAAGATGGAAAGAGTAATTCAGAACATTCAGAACATGGAACCTTGATTCATATTCCAAGCACAATGCCTCAAAGACTGATACCTGCACAACAAGCGCATTGGGCATATCCTCAAACAGACCCAGAAAGGCTACGTTACAAGGTGTTTGCAGACCTGTGGGAAAAAGGTTTTTATTTAACATCAGGTGTCAATTTTGGAGGAGATTTTCTTGCCTACCCAGGTGACCCTTCGAGATATCATTCATTTTATGTAGTGATTATTATTCCCTGGGAAAGAAAGATCACACCATTTGAGATTATCTCTGCTGGAAGACTGGGTGCAAGTGTAAAGAAAACAGCACTTCTCTGTTCTGTGAATGAGGACACCAACAAAATTGTTTACACATCTGTGAAGTGGAGTGGAATCAGCTGA

Transcript

ENSTIFT00000015138

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9BSV6	tRNA-splicing endonuclease subunit Sen34 OS=Homo sapiens OX=9606 GN=TSEN34 PE=1 SV=1
Q8BMZ5	tRNA-splicing endonuclease subunit Sen34 OS=Mus musculus OX=10090 GN=Tsen34 PE=2 SV=2
Q7SAK9	Probable tRNA-splicing endonuclease subunit tsp-4 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) OX=367110 GN=tsp-4 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009043 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01974 all species →	tRNA_int_endo	tRNA intron endonuclease, catalytic C-terminal domain	Domain	Interproscan
PF07782 all species →	DC_STAMP	DC-STAMP-like protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006676 all species →	Family	tRNA-splicing endonuclease	Interproscan
IPR006677 all species →	Domain	tRNA intron endonuclease, catalytic domain-like	Interproscan
IPR011856 all species →	Homologous_superfamily	tRNA endonuclease-like domain superfamily	Interproscan
IPR036167 all species →	Homologous_superfamily	tRNA intron endonuclease, catalytic domain-like superfamily	Interproscan
IPR001452 all species →	Domain	SH3 domain	Interproscan
IPR012858 all species →	Domain	Dendritic cell-specific transmembrane protein-like	Interproscan
IPR036028 all species →	Homologous_superfamily	SH3-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13070 all species →	TRNA-SPLICING ENDONUCLEASE SUBUNIT SEN34-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000213 all species →	Molecular Function	tRNA-intron endonuclease activity	Interproscan
GO:0006388 all species →	Biological Process	tRNA splicing, via endonucleolytic cleavage and ligation	Interproscan
GO:0000379 all species →	Biological Process	tRNA-type intron splice site recognition and cleavage	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSTIFP00000014111.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.