Gene detail

Detailed information of ENSTIFP00000016492.1 in Montipora efflorescens

Genomic Location: BLFP01001925.1:665284...669840
NR annotation: XP_015760503.1, PREDICTED: uncharacterized protein LOC107339720 [Acropora digitifera]
Species Montipora efflorescens · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ENSTIFT00000017686

atgaTTTGCAGAGGATTGAAGCTGGACAAGCCTATCAAGACGGTCATTACGCCACAAGAGCGGGCTAAGCAGTATCCCGGGAAGTTCCGTGCAGATGACAACTTGTTATTTTGTTCAACTTGTAATGTTGTTGTGGATCAccaccggaagtcagttcttgACAATCACCTTTCGGCTGTTTCACACATCAAGCGAATGAACGAATCCTCTTCGAAGCGAGCGAAACAACAGACATTGAAGACTTCTTTTAAGTGCAAAACTCCAGCACACGAAGAGAAAGTGAAAGTCTGCCATGAGTGGATAAGGGCGTGTGCTGCTGCAAACATACCGCTAAACAAATCAGAAAATCCTGTAATGCGTGAATTTCTTCTCTCCCGTGTAGTCAATGGTGGTGCGATCCCTAAGGGCACACAGCTTCGGGACCACTTATTAGATGTTTATGAGTTGGAAAAGGAAGAACTTaagcagaaaataaaagagGCAAATGTCGCTATCATGGTAGACGAGCTTTGCGACGATAATGGTCGTTGTGTAATAGACGTTATGGCGACAATTCTGGACTTTGACGAGCTTTCTCCCAGTAACGGAAACATTGCCTACCTGTTAGATACGCACTTTGTGacagaaacaaataacaaaactgTGTCCCAAGCAGTTGTTAAGACTATCAATGACTATGGAATAGACTTTGATCGTGTCCTGATTTTTAATACTGACAATGCTACTTACATGAAAAAGGCTTTCAGAGAAACTCTTTCATGTTTGTTCTCGAGTTGTGTCCATATCACCTGCCACAGCCACATCATAAGTCTAGTGGCTGGTGATTTTAAGCGACATTTCAGCTTTGTCACAGAGTTCGCCAAGTGCATgaggaatttattttttattccaaGTGGACGCAAAGCTCGTTTCCTGAAATACATGAATGACTGTGCGGGTGATCTCCAGGGCAAAGCTACTATGCCTCCCAATCCATCAACGAAGAGCTGGTCAGCATGGTTTGACTCAGCTGTGTACCACGCGAAGCACTTTAACGTCTATGAGGATTTCATCACCCAAGAGATTCAACGATGTGGTAGAAATGCTGCAAGTGCCTCGTTGTTGCGGCTTGAGGAAATGTATGGAGATGACACATTCATGAAGATGCTGCACGCCCAGCTCAGGGTTGTTGCTTACACTGGCCCAACATTGATGCATCTAATGGATTATTTTCAACAGAGAATCCCTCATGTAACACAGTCACACAACAAAATGGAGAGTCTCCTATGCATCCTTCACTCGAATTCTTCATTAAGTGAAGACAAGTTGGACTTCTGCTTCCAAGGCACATCGATGTCATTTACCAGCGACGAGAAGTCTGATGTTGCTCACACTGTCAGATCAGCATTCTCCGACGCTTACCAGAAACTAAAGAAGTACACAGATGAGGGCAGGGGACAGCCTGGCAGTACTTTCCTACGTGATGTCAGAATACTAGATCCCCGCAATCTTGTGAGTTTGGATACGACCCTCACACCCAACAGCATCCCAGGAATTGAAGACGTGCCCCAAACAGAGATGGATTTGTATGCCCATGTTATTGGCCCTGCAGCGGTGAAAAGAAGCACAAATGGAAAGCTAGACATTAAGCTGTTTTGGAAGTCGAATGCCAGTGAACTCCCCAACCTGTACAAAGTAGCCTCAATCTACTGCACAGCAACACTGGGTTCTTATGATGTGGAGCGCTGTTTTTCGACTTACAACAACGTTCTCACCGGGAAGCGAATGTCAATGACGCCAAGTACCCTCAAGGCATACCATTTCCTGAATTGGAATCTGCAAGTTAATTCTACAGTTAGAGAAGAGGTACGTTTCTATTTTTCAgtGGTTTCCGAAGGAACTCCAATTACTCCACTTTCTATGTCTGGTTTTTTCAAACCAGCTACCAAGTTATCAAGAGAGGCCGATCCATCATGGAAACCGCCAAACAATCCCAATACCACCCATAAACGGAAAGGGGTACCTGCGAAAGGCAGTGCGGGGAAACGGTTTCGTTCTAACCTGGGGAAATTCGCGAACCCCATAAAACCTATGAAAGTTAAGACTTCCTCGCCAGTTCCCTTATCCGTGAAGGTCCCATCACCAAACAATCCTCAAATACAGTGTGGCCTTGACAAGAATACGTCAGCTAAATTTGAGAAAACAGAAGCCAATGAATTTCCAGCCCACCTAAATGCAATAGTCAATGCAATGGTTGATGGTTCAGTAAAGTTTGGAGGAAGCCCACTTATTGCTAATAATGATTTGAGTTCTCTCCGTGGTGGCCATCAGAAGGACGAGGACAATTActtgagtaattttgttattgattcaTACCTAAAAGTTCTCGCCGAAACAGCTACGTGTGATGCAGAAACCATAGAGTGGGAAGTTTTCGAGAAAGGGATCGGCAGTCAGCCTGCTGTGGATCTCCTTGGAGCTAAAGCTGACCTCATGACGAAGGATTATGTCCTTGTTCCGTGTAACCCAATGACGAGCAGACACTGGTTTCTCCTTGCAGCTTTGCCTAAGCAAAAGCAGATAGTCATTATGGACAGCCTTCAAGGATTTTCTGTTAAGCCTACTCAAAAAGTTGCAGTGCGAAAGATGTGGAAGTTGCTAAAGGAAATTGATCCCTCTCTGGATGATGAAACAACTGAATGGAACTTTGTGAGCAACGCTAACGGCCAGCTACCACAGCAGGAGAACGGATACGATTGCGGTGTCTATGTATGCATTTACGCACGATGCTTGCTAGGTTTGTCTGGTGCAGCGGTAAGCAGTGATAGCATCCCTTCCTTCCGTAAGCAGATGTTACTTGAGCTTCACAGGATGAAGGTTGAAGACAAGTTACAACCAATACAAGAAGGGCAGTACTATGCAGTAGAATATCAGAGAGCATTCTACATTGGTCGCATCCTAAGGAACATGAATGCCACTCTGACAATAAAGTTCCTGCACTCAGTCGGAGCAAAAGTGTTCGACTGGCCCACACGTGACGACATTGATGACTGCTCCCCCTCCTGGCTAATCTCAGGTCCACTTGAAATCCAAGGAAGTGGTCCATTCCGATTTCCTCAGTTGGGTGAGGTAGAACACGTTTACCAGTACATAAAGAGGAGCAAGAGGAGATGA

Transcript

ENSTIFT00000017686

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8BHG9	CGG triplet repeat-binding protein 1 OS=Mus musculus OX=10090 GN=Cggbp1 PE=1 SV=1
Q9UFW8	CGG triplet repeat-binding protein 1 OS=Homo sapiens OX=9606 GN=CGGBP1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000721 (this species only) · gene tree & orthology
Ubiquitin family	DUB\|ULP\|ULP · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02902 all species →	Peptidase_C48	Ulp1 protease family, C-terminal catalytic domain	Domain	Interproscan
PF05699 all species →	Dimer_Tnp_hAT	hAT family C-terminal dimerisation region	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003653 all species →	Domain	Ulp1 protease family, C-terminal catalytic domain	Interproscan
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR008906 all species →	Domain	HAT, C-terminal dimerisation domain	Interproscan
IPR033375 all species →	Family	CGG triplet repeat-binding protein 1	Interproscan
IPR038765 all species →	Homologous_superfamily	Papain-like cysteine peptidase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR32344 all species →	U1-TYPE DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0008234 all species →	Molecular Function	cysteine-type peptidase activity	Interproscan
GO:0046983 all species →	Molecular Function	protein dimerization activity	Interproscan
GO:0003690 all species →	Molecular Function	double-stranded DNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0010468 all species →	Biological Process	regulation of gene expression	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSTIFP00000016492.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Montipora efflorescens tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Montipora efflorescens, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →