Gene detail

Detailed information of ENSTIFP00000017650.1 in Montipora efflorescens

Genomic Location: not available for this species
NR annotation: XP_015758365.1, PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp31-like [Acropora digitifera]
Species abbreviation MEFFL · all data for this species · gene families

Sequence

CDS

Transcript

ENSTIFT00000018914

GCTCCACAAGCGTTGGTCTTACGTCCATACGCAGAGAAAagatctctttccttttttttaaccttCGTTTCTTTTTGACGGATTTGGAAGTCTTTCCTGATAGAGGAGCTATTGTAAGATGTCTCTTGCAGACGAACTCTTGGCAGATTTGGAAGAGGCTGCCGAAGAAGGTGATGTGGATTTCCGAGACAATGAAGATGACATTGAAGAAGCGATGGAAACGACAGACAGTCTTGACGCGGATTCTAAATCGGTCAAAAGCGTGGCTAAACTGAAAGACAGCAAACAGTTGTGTGATATACTCgatggaattgaaaaattcagcaATCAGCCGCGCGATCAAGTTCTCGGACCAGTTGAAGTCGATCCGGAATATCAGCTGATTGTGGAAGCGAACAACCTTATGGCTGAAATCGACAATGAAATTAACATTATTCACAAATATCTTCGAGATCTTTACACCAAGCGTTTCCCAGAACTGGAATCACTCGTTCCAAATGCATTGGACTACATTCGCACGGTTGAGCTTCTAGGGAATGACCTGGAAGTCTCTAAGGTTGACTTGACAGACGTGCTACCTCCTGCCACTAAAATGGTGGTAAGTGTAACTGCGTCAACGACTCAAGGGGAAAAACTTGAAGATGATGATGTAGGACGTCTCATGGAGGCTTGCCAAACTGTTCGGGACCTGTTAGATGCAAAAGTTAAGATATTTGAATATGTTGAATCGAGAATGACATTTATTTCACCTAACCTATCGCTTATTGTGGGAGCATCAACTGCTGCTAAGCTTATGGGTGCTGCTGGTGGACTGACGAACTTGTCTAAAATGCCTGCCTGCAATGTATTATTGTTGGGatcacaaaagaaaactttgtcaGGATTTTCTAGTGCAGCGATTTTGCCGCATACAGGGCACATCTATTTCAGCGAGTTTGTCCAGaacATGCCTGCTGATTTGAGGAAGAAAGCAGCTAGAGTGGTTGCATCAAAGTGTTCATTAGCAGCAAGGGTGGACAGCTTCCATGAGAATTCAGATACATCAATGGGACAACAACTGCGGGAGAGTATTGAAGGTAAATTTGACAAGTGGTTGGAGCCCCCTCCTCTAAAAGAAGCCAAAGCACTTCCAAGACCAGATGATGCACCTAGAAAAAAGCGAGGTGGTCGAAGGGTGcggaaaatgaaagagaaatttGCCGTGACAGAGATGAGGAGGCAGGCAAACAGACTGGAGTTTGGACAGATCGGTGAAGATGTGTACCAGACAGATTTGGGTTTCTCTGTGGGTACAAtgggaagaaaggaaaacacaGGCCGTGTCCGAACACCTGCAGTTGACAAAAAGACTCAAGTCTCTATTTCCAAACGCTTGCAAAGGAGTCTACAGCAGTCTCAAGTCATGGGAGGTCAAACAACAGTACGCAGAGCTGTATCTGGAACAGCATCCAGTGTGGCCTTCACTCCTCTTCAAGGACTGGAAATTGTCAGCCCTCAAGCTGTGGAGAAGAAAGTTGAAAATGCCAAATATTTCTCAAGCACGGCTGGCTTTCTCAAAGTGAAGAAATAATAATCATGTTCTTGTGTGAATAGTTCATGTACCGTATAGTGTAATTATAATAGAACATGTTTCTCCTCTTCCTTAAGTGGGGGGTTTGGAAACTAGGTTATGTAAGTTTAAGGGATTAAAGAATCTACAGAGAAGAAATATGGAACAtggaccgaatgcataaatggcggccaacaaaattaatgtattcttttgtttatgtgctaattagactcactagccttgcTTTCGAACgacatttctattgtattttatcCATGCAACGAGGCTGGTGAGGCTAATTGgcacacaaacaaaagaatattttttggccgccatttatgaattcggtCTATGGATTTACCCTTTTTTATTTACTAGTTAGTTATATCAATCACAAGTACTGTTGTTTGATGGTTGGCTGCTTGCCTTCATTTAAATTGATGATTCCAGCTGCAAGTTCACAAAATGATGTTGCTTGTTTATACTTTCAGAACATAATTATTCAAGCTTTTTTCCCTGAAATTTCACTCTTCACATGGCATAATAGAGAAAAAAAGTGGCTTTTTAAAGTTGTTCCATTGCAGACAATCATAATCAGAGCCATAGGTTTATTCCTATTCATTCCAGACTTATACAGTTTGTGGGCCTTTTTGAAAGATTGGATTATctagaaaacaagcaaaatattATGTTTACTGTACCTTTCAAATAGCATGTGTGGTGCTACGATTGAGCAATTTTGTGCCTGCATTGTATAGCCCTCAGAAGATGTAGTTTGTTTTTGTGTCTGTTTATTCAAAGATCGaggtatacatgtatacacaCTTACAGTAATAAGTACCGGTATCTttcaaaactcattaataattcattagtGGAACATATTATCAGGTCACTGATAGAAAGTTGTGTACAGGAAATTAATCTGCTAAAATGCTCCTCATTAGAATTTGTTATATAAAGCATACTAATATAAAGGACTACAGTTTGTGTTTCTTGTGTGAtaatgttctcctc

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5U5C5	U4/U6 small nuclear ribonucleoprotein Prp31 OS=Xenopus laevis OX=8355 GN=prpf31 PE=2 SV=1
Q6NVP6	U4/U6 small nuclear ribonucleoprotein Prp31 OS=Xenopus tropicalis OX=8364 GN=prpf31 PE=2 SV=1
Q8CCF0	U4/U6 small nuclear ribonucleoprotein Prp31 OS=Mus musculus OX=10090 GN=Prpf31 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007795 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01798 all species →	Nop	snoRNA binding domain, fibrillarin	Family	Interproscan
PF09785 all species →	Prp31_C	Prp31 C terminal domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002687 all species →	Domain	Nop domain	Interproscan
IPR042239 all species →	Homologous_superfamily	Nop, C-terminal domain	Interproscan
IPR027105 all species →	Family	U4/U6 small nuclear ribonucleoprotein Prp31	Interproscan
IPR012976 all species →	Domain	NOSIC	Interproscan
IPR036070 all species →	Homologous_superfamily	Nop domain superfamily	Interproscan
IPR019175 all species →	Domain	Prp31 C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13904 all species →	PRE-MRNA SPLICING FACTOR PRP31	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000244 all species →	Biological Process	spliceosomal tri-snRNP complex assembly	Interproscan
GO:0000398 all species →	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0005687 all species →	Cellular Component	U4 snRNP	Interproscan
GO:0046540 all species →	Cellular Component	U4/U6 x U5 tri-snRNP complex	Interproscan
GO:0071011 all species →	Cellular Component	precatalytic spliceosome	Interproscan
GO:0097526 all species →	Cellular Component	spliceosomal tri-snRNP complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12844	PRPF31; U4/U6 small nuclear ribonucleoprotein PRP31	-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.