Gene detail

Detailed information of ENSTIFP00000019676.1 in Montipora efflorescens

Genomic Location: BLFP01002002.1:92539...100195
NR annotation: XP_015761770.1, PREDICTED: double-stranded RNA-binding protein Staufen homolog 2-like [Acropora digitifera]
Species Montipora efflorescens · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

ENSTIFT00000021063

ATTTTGTccacttttgaaagaaaacaaatttcttcaaaagtgTGAGGCCTCCTCGCTGTTTCTTCTCGACTTCACAACCTTAAAGttcttctcttcttttcttGGTAATTACCACCTATTTCTTTGCGGAAATTTTTGGTAATTTCGAACGACAAACTTCGGATCTCACAGTGGAAGTGGCCATCTTTTAAACCTTCTTGTTATTCGTCTGTCGACTTGTTACTTAAAGTCGTCTTTCTTCTCTATTTTTTACGACCAGTTTTAGATAATTCGCTTTATCAAGTTCCCAATTCCTCACCATGGCCCAAAAAACACCAGTCAGCTTGATGAACGAACTTGCAAAAGCGAACAAGTTAAACCCAGAATACAAAGTCACCGAGGAAAGCGGACCAGCTCACAAGCGAACCTTTACCGTTCAACTTACACTGGGCGATGTTGGTACTTGGGAGGGCAAAGCTACAAGTATCAGGGCTGCCAGGCACGCTGCCGCTAATTTGGGACTAGAGAAATGTGGACTTTGTATGCCAGAAGTCGGAAAACCTAGAGTTCAACAGGTTCATGTCACCCCAACTGTTGAACTCAATGTGTTGGCCATGAAGCTTGGCAAGTTGACCAAGTACGAGGAGCTGGCACCCAAGATGGCTTACCAACATCCTGTTAACATGGGTTATCAAGCCTTTCAAATGCAACATCAGCTACCTGGGTACCATCATGGAGGCCCTCCCCGTCCAAGGTCACCTTATGGGTTGCTGCACCCCTACACAGGACAAGACAATCACTACCGCTCATACATACATAATGACTATCATCCACGCTCTGCACCTCCACGTATACCAAGGATCGCCTGTGTTAAGCTTATAATGGGAGATCAAGAATTCTATGGCGAAGGTCGTGACAAGCAAGCTGCTCGAAAAAATGCTGCATCAAAAGCTGTTAGGGTAATCAGAGAGGAACTTGCTGCTGCTGGAGAACAGGGAGAATTAATCAAGCCTGCTGACGTAGAAGCTGTGGTCCAGAATGGTAATGAAAGTATTGTTTCGCAACAAGAGTCTTCACCAAAAAGCACCACCCCAGAATTAAAATCAGAAATTAGCCAGTTATATGAAATAGCTTCAAAGCGCAAACTTTTAGTTGGATTTGAAGATGTGAGTAGCAGTGGTCCTCCTCACATGAAACGCTTTGTGGTGAGTGCAACTGTGGGGGAATTTGTGACTCAGGGTGAGGGTTGTAAGAAAAAGGATGCCAAACAAGAGGCAGCAAGGAAAATGCTTCAAGAGCTAAAGAAACTACCAGAGCTGCCTGCCCAAGATGAAAACCTCAAAAAAGTTGGACGGTTTGTTCGTCGTGGACCTCGCATAGCAAatgacaagaaaacaaaaggagatATAGATCCTACCTTAAATCCTGTCAGCATCCTTGGGCAGTTATTCCAGCGCAGAGGTGAAGAACCCCCAATGTATCAACTCCTTCATGAGGGGGCAAATGCACAGGAACGAGAATTCACCATTCAAGTGATAGTGGGGCCTCACTCTGCCACAGGAGCAGGCCCAAACAAAAAAGAGGCTAAAAAGAGAGCTGCCGAAGCAATGTTGAAGCTGATTGGCTTTCGCTCTGCAGAAGTACAGCCAGCTAGTGCTCAGGGTGACAAAGGTgtaaaaattgagaaaacagaAAGTGAACCGAAAGGACCATTCAGTGACCCCTCCTCTGGTGGCCAACCAGCCACCATACTTCGCCGACAGCTCAAGCCAGGTTTGCTTCCCATGGTCCCTGAACTTGCAAAGCACACGCGACCAGACATGATGACCTCAGTGGTCGCACCTATTGCACAAGTGAAGGAAGTACcacagGAGCCTGTTGTACAAGGTGGATTGAACCGAGCGCCTGGCGCACCAGTTGTGAAGGCAGCTGCTCCCATTCTGACAGCTGTCCAGAAGCTTTTGCATCTCGCTGAGCTAGAAGGACTCAGAGTGCAGTTTACTGATTACCCAAAGGAACGAGAGTACCTGACGCTTGTGACAGTGTCTTGCATTCCTCCCATTACATGCTATGGATCAGGAGTGACAGTTGAATCAGCACGTGAGGAAGCAGCATCAAATGCATTAAAACCATTACTTCAACTGGGCTTGGATCGCtccactacatgtacattaaaatCATTTGAAGACAACCAAGCAGGTGGGTTGCTGCCTCAACCAACAAACAATGTTACATCAAGTGACAACGGAAGGGAAAATCAAGTTAAGAAAGAGTGATGTTCAAAAACTTGACAGGGAAAGGAAAATATTAGTGGCAGTGATTGTCTTTagtaaatagacctttttaccgatacggcggccattttgatttctattgtttcgaaagatacatgtattatGAGATgttcagggggcaaattaacatgtatttgccccctgggcatcccataatagctattcaaaacaatagaaatcaaaatggccgccgtatcggtaaaaag

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q7ZW47	Double-stranded RNA-binding protein Staufen homolog 2 OS=Danio rerio OX=7955 GN=stau2 PE=2 SV=2
Q5M7M7	Double-stranded RNA-binding protein Staufen homolog 2 OS=Xenopus tropicalis OX=8364 GN=stau2 PE=2 SV=1
Q8CJ67	Double-stranded RNA-binding protein Staufen homolog 2 OS=Mus musculus OX=10090 GN=Stau2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002781 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00035 all species →	dsrm	Double-stranded RNA binding motif	Domain	Interproscan
PF16482 all species →	Staufen_C	Staufen C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR014720 all species →	Domain	Double-stranded RNA-binding domain	Interproscan
IPR032478 all species →	Domain	Staufen, C-terminal	Interproscan
IPR051740 all species →	Family	Double-stranded RNA-binding domain-containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46054 all species →	MATERNAL EFFECT PROTEIN STAUFEN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003725 all species →	Molecular Function	double-stranded RNA binding	Interproscan
GO:0003729 all species →	Molecular Function	mRNA binding	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0007281 all species →	Biological Process	germ cell development	Interproscan
GO:0008298 all species →	Biological Process	intracellular mRNA localization	Interproscan
GO:0010494 all species →	Cellular Component	cytoplasmic stress granule	Interproscan
GO:0035418 all species →	Biological Process	protein localization to synapse	Interproscan
GO:0043005 all species →	Cellular Component	neuron projection	Interproscan
GO:0043025 all species →	Cellular Component	neuronal cell body	Interproscan
GO:0098964 all species →	Biological Process	anterograde dendritic transport of messenger ribonucleoprotein complex	Interproscan
GO:1990124 all species →	Cellular Component	obsolete messenger ribonucleoprotein complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K17597	STAU; double-stranded RNA-binding protein Staufen	-	Messenger RNA biogenesis	ko03019	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.