Gene detail

Detailed information of ENSTIFP00000021112.1 in Montipora efflorescens

Genomic Location: not available for this species
NR annotation: XP_044183158.1, spectrin alpha chain, non-erythrocytic 1-like [Acropora millepora]
Species abbreviation MEFFL · all data for this species · gene families

Sequence

CDS

ENSTIFT00000022628

ATGGACAGTTACAGAACAAAGATCAAAGATCTTAGAAAAACGTGTCAAGAATTGGTTTCGGCTCAACATTTTGATGCGGAAAGGATTCAAAGGCGACAGTCTGAAATGGAAACTCGTTTCGAGGGACTCTGCCAAAAAGCTTCTCATCGTCACAAACGCTTACTCGATTCAAACCAACTCTTCAACTTTCACCGAGAAGCCGACGAAGTTGAATCGTGGATTACCGAACGGGAATCGATCGCCATCTCCGACGATTACGGTCGCGATCTCGAGCACGTCGAAACTTTACTCAAGAAATTCGAGGATTTTATGCGTGACTTGGTGACGTCAGGGGAAAGGATTGCGGGTCTTACTGCGCAAGCTCAAACATTGTTAGACGAAGGCAACAGCGAAGAAGAGGCAATAGAAAACAGAATGGAGGAGGTGTGTTCCATGTGGGACACGTTGAAAGAGAGAACCAACTCACGTCTAGAGGCCTTGGATCGAGCGCGAGAAGTTCACGCTTTCAATCGAAACGTGGAAGAAACAAGGGCCTGGATCCAAGAAAAAGAGGCAGCACTGATGTTTATTGATGATGGGGCACGTGACCTGAGTAGTGTCCAGGCTTTGCAGAGGAAGCATCAAGGCTTTCAgTTGGATCTCAAGGCGCTTGGAGAGAAGGTCGAATCAATCGCCCATGAAGCTGAGGACTTAGCTTCAAGGTTCCCAGAGGGACATGAACAATTAACGGAACAAAGGGACGAAGTGGTGTCAACATGGCGTCGTCTGCAGGAGAAAGCTAGCAGCAAAAAATCCAACTTGACTCAATCTGAGGAGCTACAAAAATACCTCAACGACTTCAGGGATCTGATGTCTTGGATCAGTCACATGTCATCTGTGATCACCGAAGATGAGCTTCCAGACGACGTCACAAGCGCAGAGAGCCTCCTTACTCGTCACCAGGAACACAAGGCCGAAATAGAAACGAGGCAAAGGAGTGTTAATGACTTCTACGACGCTGCTGATAAACTTGTCGCCGACTCTCACTCGGCGTCGGCGGATGTCATCGACAAGAAGCAGCGGTTGTCTAAAGCGTGGCAGGCGCTGCAAATCACGTGGGGCGAAAAGGGACAGGACTTAGAGCACAGCAAAGAAGCACAAATCTTCAAGCGAGATGCGGATCAATTAGAAGCGTGGCTTAATGCTCGTGAACTAGACCAAGAGTCGAGTGACGTTGGAGATTCATTAGATGCAGTGGAGGAATTACTCAAGAAGCatgatgaatttgagaaaatGCTCCTTGCTCAGGAAATGAAACTATTGGGAATTAAAAAACGGACGTGGCAAGAGGAAGGGTTAACTAAAGAGAGAAAGGATGCTATGGAGGAGGAGGAGCTCAGAAGAGCGGAGGAACAAGCACGACAAGAGATGGAATGGATTAGAAAGAAGGAAGAAGATGAACTACAGGCAAAAAGGGAAGAAGAGCTTATGGAGAAGAGACGACTGGAGCAAATAAGACTTaaggaagaaagagagaaagaggaaaagaaaaggaaagagctAGAGGAAAAACAGACCTTGAGAGCTTTGgaagaaaggagaaaaacagaagaaagagcaaaaagggaagaagaagaagaagaaaagaagcgaCAGGAGGCTGTGAGAGGAGTGGAACGGGAAGAACAGAACAATAATGCACAGGGTCTTCGAAAAGTGTCGGAAAAAAGAGATCCCGTTAGCATTGAAGGTATCTTGCAGCGTAAACAAGAGCTTGATTCTGGTGGCCGAAAAGCACATGCGCGTGTGTGGAAGACGCTGTATACTGTGTTACGCGGACACGAACTCTTTTTCTATCGTGAAAAGAAGGACTCGCGAGGTACAAACTACAGTGCGCCTACCGTTGATCTGACAGATGGATTCTGTGAAGAAGCCAGTGACGCTGCGAGGCGAAAGAACGCGTTTAGGCTTTTATGTGAGGATGATTCGGAGTTCTTTTTTGTTGCCAAGGATCCTCAAGATCGTAATCGCTGGATAAGCAATATCAATGAAGCTGCTGGGCAAATCGATCTCCCCGCTCCTCCTCCACCTCCTCCACCACAGGCCACCCAGCTATTAAGCCCCACGCCATCATCGCGCCCGGAGCGTCAGGAAAGCGACGCCTCCACGGAAGTGACAAAACGTTATGGGCGCACACCCAGACCCCTCATCACCGTTACTAGCTTTGATGATGAAATAGATGTCCTTATCGATcctccaccccctccccctgtAAATACCCCACCTTCCTCCGCTGACCCGGAATTTCCACAAGGTAGTATGCCCATGGAGACAGAGACTAGCGATGGCTATGACATTACAGCGGATATTGGAAGCCTTCCTCTAGAACCAGACAGTCTACCACCAGCTTTTCCTCCCCCGGATTTCGCTGATTTTAATGACTTATCAGACggtgaagaaattcctgttttACCGGCTTCTCCGCCTCCGGACTTCGACTCGGATGACGAAGGTAGTCTCGAAAATGGCGTCGAAGACAGCCCCCTATCCAATATCCTTTCAGAACTTCAGCGACCAAACCCTCCCCCGAGAGATAAAAAGAAATCGGCGACTCCATTAATAGCGTCGGGGCCTGAGAGTCGTTTGACGCAAAGTTCACGGGACTTATCAAAGCCACCTATAAAACCCAAGCCTGTGAATCTTGCTGGTCCGCGGGTAAAATTTACGGGACAACCAGTAGATGTGCCAGGTTCTGTGCGATCAGCGGATGGAACTTCAGAGTCTGCGCATGACGataaaaagcaagaaaagaggaaaggagttttgggaaatatttttaagaaaaaaaagtaa

Transcript

ENSTIFT00000022628

CCAGTTTTACACAGAGGTAACTGAAGTAGAAACTTGGATACGAGAGAAGCTACCAAGAGTGTCTAGCGAGGACTATGGACGAGACGAGACTAGTGCCCAGTCTTTGCTGCGTAAGCACGAGACTTTTGATCTGGAAATGGACAGTTACAGAACAAAGATCAAAGATCTTAGAAAAACGTGTCAAGAATTGGTTTCGGCTCAACATTTTGATGCGGAAAGGATTCAAAGGCGACAGTCTGAAATGGAAACTCGTTTCGAGGGACTCTGCCAAAAAGCTTCTCATCGTCACAAACGCTTACTCGATTCAAACCAACTCTTCAACTTTCACCGAGAAGCCGACGAAGTTGAATCGTGGATTACCGAACGGGAATCGATCGCCATCTCCGACGATTACGGTCGCGATCTCGAGCACGTCGAAACTTTACTCAAGAAATTCGAGGATTTTATGCGTGACTTGGTGACGTCAGGGGAAAGGATTGCGGGTCTTACTGCGCAAGCTCAAACATTGTTAGACGAAGGCAACAGCGAAGAAGAGGCAATAGAAAACAGAATGGAGGAGGTGTGTTCCATGTGGGACACGTTGAAAGAGAGAACCAACTCACGTCTAGAGGCCTTGGATCGAGCGCGAGAAGTTCACGCTTTCAATCGAAACGTGGAAGAAACAAGGGCCTGGATCCAAGAAAAAGAGGCAGCACTGATGTTTATTGATGATGGGGCACGTGACCTGAGTAGTGTCCAGGCTTTGCAGAGGAAGCATCAAGGCTTTCAgTTGGATCTCAAGGCGCTTGGAGAGAAGGTCGAATCAATCGCCCATGAAGCTGAGGACTTAGCTTCAAGGTTCCCAGAGGGACATGAACAATTAACGGAACAAAGGGACGAAGTGGTGTCAACATGGCGTCGTCTGCAGGAGAAAGCTAGCAGCAAAAAATCCAACTTGACTCAATCTGAGGAGCTACAAAAATACCTCAACGACTTCAGGGATCTGATGTCTTGGATCAGTCACATGTCATCTGTGATCACCGAAGATGAGCTTCCAGACGACGTCACAAGCGCAGAGAGCCTCCTTACTCGTCACCAGGAACACAAGGCCGAAATAGAAACGAGGCAAAGGAGTGTTAATGACTTCTACGACGCTGCTGATAAACTTGTCGCCGACTCTCACTCGGCGTCGGCGGATGTCATCGACAAGAAGCAGCGGTTGTCTAAAGCGTGGCAGGCGCTGCAAATCACGTGGGGCGAAAAGGGACAGGACTTAGAGCACAGCAAAGAAGCACAAATCTTCAAGCGAGATGCGGATCAATTAGAAGCGTGGCTTAATGCTCGTGAACTAGACCAAGAGTCGAGTGACGTTGGAGATTCATTAGATGCAGTGGAGGAATTACTCAAGAAGCatgatgaatttgagaaaatGCTCCTTGCTCAGGAAATGAAACTATTGGGAATTAAAAAACGGACGTGGCAAGAGGAAGGGTTAACTAAAGAGAGAAAGGATGCTATGGAGGAGGAGGAGCTCAGAAGAGCGGAGGAACAAGCACGACAAGAGATGGAATGGATTAGAAAGAAGGAAGAAGATGAACTACAGGCAAAAAGGGAAGAAGAGCTTATGGAGAAGAGACGACTGGAGCAAATAAGACTTaaggaagaaagagagaaagaggaaaagaaaaggaaagagctAGAGGAAAAACAGACCTTGAGAGCTTTGgaagaaaggagaaaaacagaagaaagagcaaaaagggaagaagaagaagaagaaaagaagcgaCAGGAGGCTGTGAGAGGAGTGGAACGGGAAGAACAGAACAATAATGCACAGGGTCTTCGAAAAGTGTCGGAAAAAAGAGATCCCGTTAGCATTGAAGGTATCTTGCAGCGTAAACAAGAGCTTGATTCTGGTGGCCGAAAAGCACATGCGCGTGTGTGGAAGACGCTGTATACTGTGTTACGCGGACACGAACTCTTTTTCTATCGTGAAAAGAAGGACTCGCGAGGTACAAACTACAGTGCGCCTACCGTTGATCTGACAGATGGATTCTGTGAAGAAGCCAGTGACGCTGCGAGGCGAAAGAACGCGTTTAGGCTTTTATGTGAGGATGATTCGGAGTTCTTTTTTGTTGCCAAGGATCCTCAAGATCGTAATCGCTGGATAAGCAATATCAATGAAGCTGCTGGGCAAATCGATCTCCCCGCTCCTCCTCCACCTCCTCCACCACAGGCCACCCAGCTATTAAGCCCCACGCCATCATCGCGCCCGGAGCGTCAGGAAAGCGACGCCTCCACGGAAGTGACAAAACGTTATGGGCGCACACCCAGACCCCTCATCACCGTTACTAGCTTTGATGATGAAATAGATGTCCTTATCGATcctccaccccctccccctgtAAATACCCCACCTTCCTCCGCTGACCCGGAATTTCCACAAGGTAGTATGCCCATGGAGACAGAGACTAGCGATGGCTATGACATTACAGCGGATATTGGAAGCCTTCCTCTAGAACCAGACAGTCTACCACCAGCTTTTCCTCCCCCGGATTTCGCTGATTTTAATGACTTATCAGACggtgaagaaattcctgttttACCGGCTTCTCCGCCTCCGGACTTCGACTCGGATGACGAAGGTAGTCTCGAAAATGGCGTCGAAGACAGCCCCCTATCCAATATCCTTTCAGAACTTCAGCGACCAAACCCTCCCCCGAGAGATAAAAAGAAATCGGCGACTCCATTAATAGCGTCGGGGCCTGAGAGTCGTTTGACGCAAAGTTCACGGGACTTATCAAAGCCACCTATAAAACCCAAGCCTGTGAATCTTGCTGGTCCGCGGGTAAAATTTACGGGACAACCAGTAGATGTGCCAGGTTCTGTGCGATCAGCGGATGGAACTTCAGAGTCTGCGCATGACGataaaaagcaagaaaagaggaaaggagttttgggaaatatttttaagaaaaaaaagtaaatagaGTGTGAATTTATAGGACTTGGGACTATCCATCGAATTTGTGATCTCAGAATTCACAGGAATGTGACAAAATAAAGTCGCCGTAATTTTTTAATATACATTTTAGCAAAATATAATCATATACAAGTGGACTGTATATAGCTATTTAACAGATAAAATTTTCAATATTTAAGGTAAAGTATTTTGTCCTGGTAGCCAATTTTAATGTGCGCAATTAaacttacatttttttaaacagtgGAGACTATTCTTTCTCCCTCCTCTAAACAAACCTGGGCACAACAATTTAGATCATCTTGAAGTAATGATTCTGTGAAAGAAACCgtcaaaattcttttgaaattggtGTCACCAAATGAAACGGTAAGTCAAACTCAAGGCATCGAAAGCAACAAGAGGTCACACATTGACGCAGGAAAGTGTTTTCTGTACCGGCGCTTGCTTGTCTTTACTCCACAATCTGTTTTACACGGTTTATTTCTTCCTGTAATCTATC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P16546	Spectrin alpha chain, non-erythrocytic 1 OS=Mus musculus OX=10090 GN=Sptan1 PE=1 SV=4
P16086	Spectrin alpha chain, non-erythrocytic 1 OS=Rattus norvegicus OX=10116 GN=Sptan1 PE=1 SV=2
Q13813	Spectrin alpha chain, non-erythrocytic 1 OS=Homo sapiens OX=9606 GN=SPTAN1 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003141 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00435 all species →	Spectrin	Spectrin repeat	Domain	Interproscan
PF15410 all species →	PH_9	Pleckstrin homology domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018159 all species →	Repeat	Spectrin/alpha-actinin	Interproscan
IPR001849 all species →	Domain	Pleckstrin homology domain	Interproscan
IPR002017 all species →	Repeat	Spectrin repeat	Interproscan
IPR001605 all species →	Domain	Pleckstrin homology domain, spectrin-type	Interproscan
IPR041681 all species →	Domain	Pleckstrin homology domain 9	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11915 all species →	SPECTRIN/FILAMIN RELATED CYTOSKELETAL PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005543 all species →	Molecular Function	phospholipid binding	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0030036 all species →	Biological Process	actin cytoskeleton organization	Interproscan
GO:0030054 all species →	Cellular Component	cell junction	Interproscan
GO:0030864 all species →	Cellular Component	cortical actin cytoskeleton	Interproscan
GO:0042995 all species →	Cellular Component	cell projection	Interproscan
GO:0051015 all species →	Molecular Function	actin filament binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSTIFP00000021112.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.