Gene detail

Detailed information of ENSTIFP00000023023.1 in Montipora efflorescens

Genomic Location: not available for this species
NR annotation: XP_029213441.1, pre-mRNA-splicing factor cwc2-like [Acropora millepora]
Species abbreviation MEFFL · all data for this species · gene families

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5BB35	Pre-mRNA-splicing factor cwc2 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=cwc2 PE=3 SV=1
Q4WU07	Pre-mRNA-splicing factor cwc2 OS=Aspergillus fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC A1100 / Af293) OX=330879 GN=cwc2 PE=3 SV=1
Q6T412	Pre-mRNA-splicing factor CWC2 OS=Leptosphaeria maculans OX=5022 GN=CWC2 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002319 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16131 all species →	Torus	Torus domain	Domain	Interproscan
PF00076 all species →	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504 all species →	Domain	RNA recognition motif domain	Interproscan
IPR032297 all species →	Domain	Torus domain	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR039171 all species →	Family	Pre-mRNA-splicing factor Cwc2/Slt11	Interproscan
IPR034181 all species →	Domain	Pre-mRNA-splicing factor Cwc2, RNA recognition motif	Interproscan
IPR000571 all species →	Domain	Zinc finger, CCCH-type	Interproscan
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14089 all species →	PRE-MRNA-SPLICING FACTOR RBM22	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0000974 all species →	Cellular Component	Prp19 complex	Interproscan
GO:0017070 all species →	Molecular Function	U6 snRNA binding	Interproscan
GO:0036002 all species →	Molecular Function	pre-mRNA binding	Interproscan
GO:0071006 all species →	Cellular Component	U2-type catalytic step 1 spliceosome	Interproscan
GO:0071007 all species →	Cellular Component	U2-type catalytic step 2 spliceosome	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K27398	CWC2; pre-mRNA-splicing factor CWC2	-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.