Detailed information of ENSTIFP00000024181.1 in Montipora efflorescens

Genomic Location: BLFP01002376.1:518772...527173
NR annotation: XP_029185318.2, solute carrier family 2, facilitated glucose transporter member 12-like isoform X2 [Acropora millepora]
Species Montipora efflorescens · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q0P4G6Solute carrier family 2, facilitated glucose transporter member 10 OS=Xenopus tropicalis OX=8364 GN=slc2a10 PE=2 SV=1
Q6GN01Solute carrier family 2, facilitated glucose transporter member 10 OS=Xenopus laevis OX=8355 GN=slc2a10 PE=2 SV=1
O95528Solute carrier family 2, facilitated glucose transporter member 10 OS=Homo sapiens OX=9606 GN=SLC2A10 PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000384 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00083
all species →		Sugar_trSugar (and other) transporterFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036259
all species →		Homologous_superfamilyMFS transporter superfamilyInterproscan
IPR005828
all species →		FamilyMajor facilitator, sugar transporter-likeInterproscan
IPR050820
all species →		FamilyMajor Facilitator Superfamily Sugar TransporterInterproscan
IPR020846
all species →		DomainMajor facilitator superfamily domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR48023
all species →		D-XYLOSE-PROTON SYMPORTER-LIKE 2Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0016020
all species →		Cellular ComponentmembraneInterproscan
GO:0022857
all species →		Molecular Functiontransmembrane transporter activityInterproscan
GO:0055085
all species →		Biological Processtransmembrane transportInterproscan
GO:0005355
all species →		Molecular Functionobsolete glucose transmembrane transporter activityInterproscan
GO:0015293
all species →		Molecular Functionsymporter activityInterproscan
GO:1904659
all species →		Biological ProcessD-glucose transmembrane transportInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K08148SLC2A11, GLUT11; MFS transporter, SP family, solute carrier family 2 (facilitated glucose transporter), member 11-Transportersko02000deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Montipora efflorescens tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Montipora efflorescens, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

AnalysisWhat it doesStatus
Primer designDesign PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.template foundopen →
BLASTSearch this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.template foundopen →
Expression heatmapDraw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.no expression matrix–
Gene family / orthogroupLook this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.open →
Gene set analysisStart a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.open →
TOP