Genomic Location: BLFP01002879.1:633721...637052
NR annotation: XP_044177819.1, LOW QUALITY PROTEIN: elongation factor Ts, mitochondrial-like [Acropora millepora]
Species Montipora efflorescens · all data for this species · gene families
| CDS |
| ENSTIFT00000028563 |
| Transcript |
| ENSTIFT00000028563 |
| Protein |
| ENSTIFP00000026636.1 |
| UniProt accession | Description |
|---|---|
| A7SPW6 | Elongation factor Ts, mitochondrial OS=Nematostella vectensis OX=45351 GN=v1g215604 PE=3 SV=1 |
| B5X5B4 | Elongation factor Ts, mitochondrial OS=Salmo salar OX=8030 GN=tsfm PE=2 SV=1 |
| A1L2P7 | Elongation factor Ts, mitochondrial OS=Xenopus laevis OX=8355 GN=tsfm PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0007261 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00889 all species → | EF_TS | Elongation factor TS | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR014039 all species → | Domain | Translation elongation factor EFTs/EF1B, dimerisation | Interproscan |
| IPR036402 all species → | Homologous_superfamily | Elongation factor Ts, dimerisation domain superfamily | Interproscan |
| IPR009060 all species → | Homologous_superfamily | UBA-like superfamily | Interproscan |
| IPR018101 all species → | Conserved_site | Translation elongation factor Ts, conserved site | Interproscan |
| IPR001816 all species → | Family | Translation elongation factor EFTs/EF1B | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11741 all species → | ELONGATION FACTOR TS | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003746 all species → | Molecular Function | translation elongation factor activity | Interproscan |
| GO:0006414 all species → | Biological Process | translational elongation | Interproscan |
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
| GO:0005759 all species → | Cellular Component | mitochondrial matrix | Interproscan |
| GO:0070125 all species → | Biological Process | mitochondrial translational elongation | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K02357 | tsf, TSFM; elongation factor Ts | - | Mitochondrial biogenesis | ko03029 | deepkoala |
Genes whose expression across the transcriptome samples of Montipora efflorescens tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Montipora efflorescens, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |