Gene detail

Detailed information of ENSTIFP00000027588.1 in Montipora efflorescens

Genomic Location: BLFP01003187.1:128149...142433
NR annotation: CAH3127054.1, unnamed protein product [Porites lobata]
Species Montipora efflorescens · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6GLI9	DNA-directed RNA polymerase I subunit RPA49 OS=Xenopus laevis OX=8355 GN=polr1e PE=2 SV=1
O14086	DNA-directed RNA polymerase I subunit rpa49 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rpa49 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006486 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06870 all species →	RNA_pol_I_A49	A49-like RNA polymerase I associated factor	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009668 all species →	Family	RNA polymerase I associated factor, A49-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14440 all species →	DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA49	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0001188 all species →	Biological Process	RNA polymerase I preinitiation complex assembly	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0005736 all species →	Cellular Component	RNA polymerase I complex	Interproscan
GO:0006351 all species →	Biological Process	DNA-templated transcription	Interproscan
GO:0006362 all species →	Biological Process	transcription elongation by RNA polymerase I	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03005	RPA49, POLR1E; DNA-directed RNA polymerase I subunit RPA49	-	Transcription machinery	ko03021	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.