Gene detail

Detailed information of ENSTIFP00000028113.1 in Montipora efflorescens

Genomic Location: not available for this species
NR annotation: XP_029214401.2, negative elongation factor D-like [Acropora millepora]
Species Montipora efflorescens · all data for this species · gene families

Sequence

CDS

Transcript

ENSTIFT00000030200

GAAAAACATGGCGGCAGCGGCGACAGCGGCGACAGCGCAGGGCGGCTTGTCCTTTTTTCACAAAAGATTTCACAGTTTCTTAGGATAATCACATTTGTGTTCTCAAGCGAACATGGATGACTATGGCGAAGATGTTGGCTGGGATGAAGCGGCTTTAAGTCCTTCAGACGAGAAAAGAGACAATGAAGTGGTTATCCAAGAGTGCATGCAGAATTTTGCTTCAAGAGACTTCATTATGGAGCCGGACATTTTCAACAACGTAAGGAGGTATTACCAAGCAGGAGGTATCCATGAGGAATTGGTTAAGTTGTTATCAGATAATTATACAGGAATTGCACAAAGTACAAACCTCCTGGCCAATTGGTTGATTGTGACAGGGGCTAAAGTAGCTGAAGTTGAACAAATGGTGGAAAACCACCTTGAAACCCTCATCATTAAACACTTCGACCCAAAGAAAGCTGATTCAATCTTCTCTGCTGAGGGAGAGACCCCATCATGGTTGGAAGATATGATTGTTCATCAGACATGGAGGTCCATGTTTTATAAGTTGGCTGAACATTATCCAGACTGTCTGATGCTTAACTTCACCATCAAGCTGATTTCTGATGCAGGTTATCAAGGAGAGATTACAAGTGTGTCAACAGCTTGTCATCAAATTGAAGTGTTTTCCCGTGTGCTCAAGACTTCAGCTTGTTCATTTCTAGAGGAAGGAGAGCAGTCAATTGACAACAACCTACCCGAGTTTTCAAAATTGGTGTGTTATGGACAACACACCTACTTGTATGCACAGTGTTTGTTGAATCATATTGCTCAAAACACCGAGGGAGGAAATAAGCTAACACGACTTAGCCAAGAACTCCAAAAAAGAGCCGTAGAAAGTGGTCATGAAGTGACTGAGATCACATTGTCAATGAATGGAGCTGCAGCATATCCTAGAGCAAACTCTGCTCTCTCGTCCATGCTTGGAAAAAATTCTCTTAACCCAGGGGACATCACTGTGCTATACAAGTTGTACAGTAGTTCCCAGCCACCACCATGTGCTATTATCAGAGTACCACAATTTTTAGAACTCCTTTTGGAATCATTGTTCAAACCTGGTCAGCATTTAAATCCAGAGCACAAGTTCAAATATGTTTACTTGCTGGCTTATGCAGCATCAGTACATGAAACCTGGATCGAGaATGAGCGTGCAACACTCAATAAAGATGAGCTTAAAACAACCTCTCAGGCTTTAGACAAAATACACATGCTATGTGTGCAGGAAACCAAGAAAGGTTCTCAATTGCTGGCTGAAGTGGGTGTCCTGTTCCAGTGTATAAGATTTCCTGTTGTAGCCATGGGTTTGCTTAAATGGGTTGACTTCACAGTCTCTGACCCATCTTTCTTTAAACTTCTCACGGACTCAACACCAGTCCACTTGGCTTTACTGGATGAGATAAGTTCCTGTCATCCCCTTCAACACCGCTTGGTGCATAATGTATTGATTCGACTTTTTGAGTCACCAACGCCGTTAGATACTTTAGTTGAGCTCGAATTCAAGAAAACAGTTTTAGACAGAATGATTCATCTACTGAGCAGAGGTTATGTGATGGCTGTTATTAGCTATATAAACAGCTGTCTTGAGAAACAGAACACAGATAACTCGTTGATAAGACACTTTGTTACTGAGGTCCTTGAAATGATAGCTCCTCCATACTCGCCCGAGTTCATCCAGGTTTTCCTTCCCATCGTTCGTAACGAAGAGATCACAGGTAGACTACGCAATGCTGATCGCACAGATGACGTCTCTTTGTTTTTAGCTCATTGTGCTCAACAAACAGGAGTGTAGGCAGTGAAGCAAGGACTACTCTAGAAGGAATACCCTCTCTGGATTTTTATCCTAGCTGCATGTTTTCCAGGctctcttgttttcttttctgaagAGATATCTCGAGGAGGGAACATGGGTGCTTAGGAGCTCAAAAAAACGTTTCAAGACATAATAagcaataataacaaaaactaTATTTAAGCGTGACTCGGAATACATAGAAAACGTCCTTGGATGAATGGAGACCCCCAAAATGATGCTATTGTTTCGTTATCAATCATATAAGCGCACTGAAGGTATTTTTGTTGCCTTTAGCTGAGGATGGAGAGGGGTTGAAACGGATTGAACTCTGAAAGAGTTCTTCGGCTTTTTGGATACGCTGATATAGCCAAAACACATGCGGCTATTTCATCCTGGTGAAATTCTTTTGATATCCTCTCCTCGAATTGTCAGCAATGAATAGACGAGAATGTCAAGTGCCGTAGTAATTGGGGTGACTGTTAATCCAAGCACATCAAACCAAAAAGTGTTGATTTTTCGTGAGAAGGGCAAACTGGAGTGCTTgtggaaaaacctctcagagtgAAGCAGAGAGCCAAGACAACCCACATGTGTTGCCGTACCCGGGACACACTTTTGGAGGCCAGTTTTCTCACCACCACGTCAACCTGCTCCCTAAATTAAGATTTGGAACTTATGCGAGTGTGACGATACGAATACATTAGAATTTTTACAGTATTTGCTGTAAAAGAAATGGTGATAATTTGCCAAACTACCTCAGTATTTGGACATGATGTCAACATCAGCAGGTTTATGCAAAATCTAAAAAATGTGGATGAATATTTATCgatgtattatttttttataaattaacAAAATGATTGTGATGTAAATATTTCTAGGTAAATACGTGTATTTAGTCCTTCAACATTAAAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8IXH7	Negative elongation factor C/D OS=Homo sapiens OX=9606 GN=NELFCD PE=1 SV=2
Q5RFA0	Negative elongation factor D OS=Pongo abelii OX=9601 GN=NELFCD PE=2 SV=1
A5GFY4	Negative elongation factor D OS=Sus scrofa OX=9823 GN=NELFCD PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005020 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04858 all species →	TH1	TH1 protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006942 all species →	Family	TH1 protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12144 all species →	NEGATIVE ELONGATION FACTOR D	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0045892 all species →	Biological Process	negative regulation of DNA-templated transcription	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0032021 all species →	Cellular Component	NELF complex	Interproscan
GO:0034244 all species →	Biological Process	negative regulation of transcription elongation by RNA polymerase II	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15181	TH1L, NELFD; negative elongation factor C/D	-	Transcription machinery	ko03021	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.